scAtria single-cell spatial atlas resource

Browse

? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
Card Table
1,777 Samples
Search
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 1,777 matches · sample view
Reset
Columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
Modality: Spatial transcriptomics × 1,777 matches 1,564 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
GSM5910316_Panel4_CW60220F-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910316_Panel4_CW60220F-3_i Brain Non-cancer disease MERFISH 10,538 Source
GSM5910317_Panel4_CW20012E-2_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910317_Panel4_CW20012E-2_ii Brain Non-cancer disease MERFISH 14,849 Source
GSM5910318_Panel4_CW60230E-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910318_Panel4_CW60230E-4_i Brain Non-cancer disease MERFISH 22,415 Source
GSM5910319_Panel4_CW20041A-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910319_Panel4_CW20041A-2_i Brain Non-cancer disease MERFISH 9,998 Source
GSM5910320_Panel4_CW20053A-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910320_Panel4_CW20053A-2_i Brain Non-cancer disease MERFISH 12,325 Source
GSM5910321_Panel4_CW20053A-2_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910321_Panel4_CW20053A-2_ii Brain Non-cancer disease MERFISH 12,854 Source
GSM5910322_Panel4_CW60219E-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910322_Panel4_CW60219E-4_i Brain Non-cancer disease MERFISH 33,625 Source
GSM5910323_Panel4_CW60220F-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910323_Panel4_CW60220F-4_i Brain Non-cancer disease MERFISH 14,373 Source
GSM5910324_Panel4_CW60219E-4_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910324_Panel4_CW60219E-4_ii Brain Non-cancer disease MERFISH 33,531 Source
GSM5910325_Panel4_CW20047D-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910325_Panel4_CW20047D-3_i Brain Non-cancer disease MERFISH 4,905 Source
GSM5910326_Panel4_CW60040F-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910326_Panel4_CW60040F-4_i Brain Non-cancer disease MERFISH 21,140 Source
GSM7709892_Panel1_CW20047D-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709892_Panel1_CW20047D-1_i Brain Non-cancer disease MERFISH 20,654 Source
GSM7709893_Panel1_CW20047D-1_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709893_Panel1_CW20047D-1_ii Brain Non-cancer disease MERFISH 10,126 Source
GSM7709894_Panel1_CW60218E-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709894_Panel1_CW60218E-3_i Brain Non-cancer disease MERFISH 8,666 Source
GSM7709895_Panel1_CW20050D-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709895_Panel1_CW20050D-1_i Brain Non-cancer disease MERFISH 40,435 Source
GSM7709896_Panel1_CW60230E-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709896_Panel1_CW60230E-3_i Brain Non-cancer disease MERFISH 34,692 Source
GSM7709897_Panel1_CW20051C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709897_Panel1_CW20051C-1_i Brain Non-cancer disease MERFISH 7,432 Source
GSM7709898_Panel1_CW60115F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709898_Panel1_CW60115F-1_i Brain Non-cancer disease MERFISH 17,873 Source
GSM7709899_Panel1_CW60171E-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709899_Panel1_CW60171E-1_i Brain Non-cancer disease MERFISH 19,283 Source
GSM7709900_Panel1_CW20320C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709900_Panel1_CW20320C-1_i Brain Non-cancer disease MERFISH 26,829 Source
GSM7709901_Panel1_CW20324C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709901_Panel1_CW20324C-1_i Brain Non-cancer disease MERFISH 11,540 Source
GSM7709902_Panel1_CW60108A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709902_Panel1_CW60108A-1_i Brain Non-cancer disease MERFISH 6,987 Source
GSM7709903_Panel1_CW60134F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709903_Panel1_CW60134F-1_i Brain Non-cancer disease MERFISH 23,983 Source
GSM7709904_Panel1_CW60228D-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709904_Panel1_CW60228D-1_i Brain Non-cancer disease MERFISH 15,182 Source
GSM7709905_Panel1_CW20081F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709905_Panel1_CW20081F-1_i Brain Non-cancer disease MERFISH 25,765 Source
GSM7709906_Panel1_CW60109C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709906_Panel1_CW60109C-1_i Brain Non-cancer disease MERFISH 11,635 Source
GSM7709907_Panel1_CW60171E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709907_Panel1_CW60171E-2_i Brain Non-cancer disease MERFISH 28,490 Source
GSM7709908_Panel1_CW20324C-1_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709908_Panel1_CW20324C-1_ii Brain Non-cancer disease MERFISH 19,501 Source
GSM7709909_Panel1_CW20041A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709909_Panel1_CW20041A-1_i Brain Non-cancer disease MERFISH 40,008 Source
GSM7709910_Panel1_CW20002A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709910_Panel1_CW20002A-1_i Brain Non-cancer disease MERFISH 17,599 Source
GSM7709911_Panel1_CW60109C-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709911_Panel1_CW60109C-2_i Brain Non-cancer disease MERFISH 34,662 Source
GSM7709912_Panel1_CW60172A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709912_Panel1_CW60172A-1_i Brain Non-cancer disease MERFISH 5,960 Source
GSM7709913_Panel1_CW60245L-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709913_Panel1_CW60245L-1_i Brain Non-cancer disease MERFISH 26,197 Source
GSM8291572_Panel1_CW20047D-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM8291572_Panel1_CW20047D-2_i Brain Non-cancer disease MERFISH 36,027 Source
GSM8291573_Panel1_CW60171E-2_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM8291573_Panel1_CW60171E-2_ii Brain Non-cancer disease MERFISH 34,182 Source
GSM8876950_slide_1 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876950_slide_1 Large intestine Primary cancer CosMx 61,418 Source
GSM8876951_slide_2 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876951_slide_2 Large intestine Primary cancer CosMx 171,406 Source
GSM8876952_slide_3 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876952_slide_3 Large intestine Primary cancer CosMx 119,217 Source
GSM8876953_slide_4 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876953_slide_4 Large intestine Primary cancer CosMx 75,613 Source
GSM8876954_slide_5 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876954_slide_5 Large intestine Primary cancer CosMx 54,334 Source
GSM8876955_slide_6 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876955_slide_6 Large intestine Primary cancer CosMx 32,162 Source
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876956_slide_7 Large intestine Primary cancer CosMx 60,351 Source
GSM8876957_slide_8 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876957_slide_8 Large intestine Primary cancer CosMx 237,675 Source
GSM8876958_slide_9 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876958_slide_9 Large intestine Primary cancer CosMx 52,722 Source
GSM8876959_slide_10 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876959_slide_10 Large intestine Primary cancer CosMx 185,327 Source
GSM8876960_slide_11 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876960_slide_11 Large intestine Primary cancer CosMx 52,500 Source
GSM8876961_slide_12 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876961_slide_12 Large intestine Primary cancer CosMx 583,620 Source
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876962_slide_13 Large intestine Primary cancer CosMx 76,057 Source
GSM8876963_slide_14 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876963_slide_14 Large intestine Primary cancer CosMx 139,157 Source
DLBCL_41120574__CosMx_SMI__F1_6 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 155,694 Source