scAtria single-cell spatial atlas resource

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4 Datasets
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Organ: Bone marrow × 4 matches 4 curated
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion

Dataset key: BoneMarrow_38714197__PCF_CODEX

Bone marrow 32

Disease detail: Healthy/control: Normal/healthy bone marrow control, Primary cancer: Acute myeloid leukemia

Healthy/control 27/32 Primary cancer 5/32
Samples
32
Cells
1,214,574
Curation
Curated
DEG
Caveat
Spatial
15/32
Open dataset
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

CML_41592325 · PCF / CODEX / PhenoCycler Fusion

Dataset key: CML_41592325__PCF_CODEX

Bone marrow 55

Disease detail: Primary cancer: Chronic myeloid leukemia bone marrow

Primary cancer 55
Samples
55
Cells
2,033,725
Curation
Curated
DEG
Caveat
Spatial
1/55
Open dataset
IMC / Imaging Mass Cytometry Spatial proteomics Curated

Melanoma_35363543 · IMC / Imaging Mass Cytometry

Dataset key: Melanoma_35363543__IMC

Bone marrow 1/72 Brain 4/72 Large intestine 5/72 Lymph node metastasis 20/72 Skin 42/72

Disease detail: Primary cancer: Melanoma, Metastatic cancer: Lymphoid tissue metastasis, Healthy/control: Melanocytic nevus / non-malignant skin control

Primary cancer 31/72 Metastatic cancer 29/72 Healthy/control 12/72
Samples
72
Cells
272,135
Curation
Curated
DEG
Caveat
Spatial
72/72
Open dataset
Xenium Spatial transcriptomics Curated

Xenium Human Multi-Tissue and Cancer Panel showcase

Dataset key: XeniumMulti_10xGenomics__Xenium

Bone marrow 2/20 Heart 1/20 Kidney 3/20 Liver 2/20 Lung 2/20 Lymphoid tissue 3/20 Musculoskeletal 1/20 Ovary 1/20 Pancreas 3/20 Skin 2/20

Disease detail: Healthy/control: Healthy human, Primary cancer: Lung cancer, Non-cancer disease: Follicular lymphoid hyperplasia

Healthy/control 9/20 Primary cancer 9/20 Non-cancer disease 2/20
Samples
20
Cells
5,095,938
Curation
Curated
DEG
NA
Spatial
0/20
Open dataset