scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
494 Samples
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 494 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Organ: Brain × 494 matches 417 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BrainTumor_36725935__IMC__Glioma_115C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,789 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_116C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,993 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_117C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,828 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_117C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,052 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_118C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,442 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_118C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,761 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_119C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 981 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_119C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 933 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_120C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,176 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_120C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,730 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_121C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,616 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_122C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,528 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_122C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,873 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_123C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,906 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_123C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,586 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_123C3 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,790 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_124C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,543 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_124C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,469 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_125C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,776 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_125C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,824 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_126C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,687 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_126C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,493 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_127C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,600 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_128C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,339 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_128C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,018 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_128N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 845 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_129C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,117 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_129C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,019 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_130C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,355 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_130C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,753 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_131C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,307 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_131C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,450 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_132C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,669 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_132C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,893 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_133C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,827 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_134C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,806 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_134C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,604 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_135C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,379 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_135C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,072 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_136C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,156 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_137C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,092 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_137C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,062 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_138C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,861 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_138C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,445 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_139C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,533 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_139C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,850 T1T2T3T1T2T3T1T2T3 Curated
CosMx6k_Bruker__CosMx_SMI__CosMxFrontalCortex6k_Bruker Bruker CosMx 6k FFPE showcase Brain Healthy/control CosMx 188,686 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxHippocampusWTx_Bruker Bruker CosMx WTx FFPE showcase Brain Healthy/control CosMx 131,568 Curated
Melanoma_35363543__IMC__09RD Melanoma_35363543 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 5,605 T1T2T3T1T2T3T1T2T3 Curated
Melanoma_35363543__IMC__10RD Melanoma_35363543 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 4,537 T1T2T3T1T2T3T1T2T3 Curated