scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 1,099 matches · sample view
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Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
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Organ: Breast × 1,099 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
BRCA_31959985__IMC__BaselTMA_SP42_16_X4Y4__gate244 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 221 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_262_X10Y8__gate160 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 218 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0141__core1__image116 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 216 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0288__core1__image347 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 211 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_31_X16Y2__gate022 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 207 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_150_X6Y3__gate316 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 206 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0427__core1__image147 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 206 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_84_X8Y1__gate217 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 205 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_172_X10Y2__gate293 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 204 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0416__core1__image225 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 204 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0197__core1__image172 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 201 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0623__core1__image4 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 200 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_187_X3Y2__gate091 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 194 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0241__core1__image289 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 194 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0212__core1__image237 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 192 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0622__core1__image283 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 190 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0367__core1__image335 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 188 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_70_X6Y3__gate209 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 187 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0244__core1__image519 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 187 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0087__core1__image450 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 186 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0392__core1__image280 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 186 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0347__core1__image42 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 185 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0173__core1__image45 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 183 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0120__core1__image495 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 182 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0645__core1__image490 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 182 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_103_X6Y4__gate322 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 179 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0186__core1__image156 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 178 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_80_X4Y3__gate245 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 175 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0020__core1__image88 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 175 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0464__core1__image509 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 175 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0555__core1__image41 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 172 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0647__core1__image439 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 170 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0336__core1__image183 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 166 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0218__core1__image103 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 163 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0218__core1__image124 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 160 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_215_X4Y1__gate247 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 159 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0605__core1__image12 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 156 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0490__core1__image309 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 154 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0416__core1__image224 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 153 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0524__core1__image402 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 153 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0334__core1__image448 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 151 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0193__core1__image327 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 150 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0241__core1__image272 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 149 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_4_X16Y3__gate263 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 148 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_265_X14Y1__gate153 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 141 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0241__core2__image496 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 141 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0554__core1__image290 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 138 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0630__core1__image99 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 133 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0152__core1__image452 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 126 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0214__core1__image329 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 115 T1T2T3T1T2T3T1T2T3