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scAtria
single-cell spatial atlas resource
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Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset
Sample
Card
Table
1,099 Samples
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Examples
Study ID
HNSCC_41616773
Modality
Spatial transcriptomics
Technique
Xenium
Organ
breast
Disease state
primary cancer
Disease detail
breast cancer
Filter scope
1,099 matches · sample view
Applied
Dataset
ASD_42288509 · MERFISH / MERSCOPE
10x Genomics Atera showcase
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion
BrainTumor_36725935 · IMC / Imaging Mass Cytometry
BRCA_31959985 · IMC / Imaging Mass Cytometry
BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging
BRCA_35122013 · IMC / Imaging Mass Cytometry
CastlemanDisease_40593805 · Xenium
CervicalCancer_CmTSA_41807362
cHL_41923627 · CosMx SMI / NanoString SMI
cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging
cHL_41923627 · PCF / CODEX / PhenoCycler Fusion
CML_41592325 · PCF / CODEX / PhenoCycler Fusion
Bruker CosMx 1k FFPE showcase
Bruker CosMx 64-protein FFPE showcase
Bruker CosMx 6k FFPE showcase
Bruker CosMx WTx FFPE showcase
CRC_32763154 · PCF / CODEX / PhenoCycler Fusion
CRC_40189697 · IMC / Imaging Mass Cytometry
CRC_41986711 · CosMx SMI / NanoString SMI
CRC_42167227 · CosMx SMI / NanoString SMI
CutaneousLeishmaniasis_40371647 · CosMx SMI / NanoString SMI
DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion
DKD_42056516 · CosMx SMI / NanoString SMI
DKD_42056516 · Xenium
DLBCL_41120574 · CosMx SMI / NanoString SMI
DLBCL_41874448 · CosMx SMI / NanoString SMI
DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion
GBM_40972572 · CosMx SMI Protein
HCC_39304772 · PCF / CODEX / PhenoCycler Fusion
HCC_39327501 · PCF / CODEX / PhenoCycler Fusion
HCC_39455893 · IMC / Imaging Mass Cytometry
HCC_39965889 · PCF / CODEX / PhenoCycler Fusion
LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI
HGSC_39179931 · CosMx SMI / NanoString SMI
HGSC_39179931 · MERFISH / MERSCOPE
HGSC_39179931 · Xenium
HGSOC_38570491 · CosMx SMI / NanoString SMI
HNSCC_41616773 · Other ST
HNSCC_41616773 PCF discovery cohort
HNSCC_41616773 PCF healthy lymph node cohort
HNSCC_41616773 PCF validation cohort
IBD_42049732 · CosMx SMI / NanoString SMI
LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI
IgAN_38898271 · Xenium
Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion
Intestine_39843748 · MERFISH / MERSCOPE
Intestine_39843748 · Xenium
Liver_41986723 · MERFISH / MERSCOPE
LUAD_36725934 · IMC / Imaging Mass Cytometry
Melanoma_35363543 · IMC / Imaging Mass Cytometry
Melanoma_40148341 · CosMx SMI / NanoString SMI
Melanoma_40457060 · CosMx SMI / NanoString SMI
Melanoma_41916292 · CyCIF / Cyclic IF
MERFISH 500-plex Vizgen showcase
MERFISH 815-plex Vizgen showcase
MERFISH 960-plex Vizgen showcase
MIBC_42126225 · Xenium
Neocortex_39779846 · MERFISH / MERSCOPE
Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion
NormalSkin_41872488 · MERFISH / MERSCOPE
NSCLC_38242124 · IMC / Imaging Mass Cytometry
NSCLC_40220761 · CosMx SMI / NanoString SMI
NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion
Oral_41663813 · Xenium
OSCC_41707652 · IMC / Imaging Mass Cytometry
PDAC_39227743 · CosMx SMI / NanoString SMI
PDAC_40269162 · CosMx SMI / NanoString SMI
PDAC_41916312 · Xenium
PulmonaryFibrosis_39901013 · Xenium
RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI
SCN_41720090 · MERFISH / MERSCOPE
SCN_41720090 · Visium HD
SPATCH_41107232 · CosMx SMI / NanoString SMI
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics
SPATCH_41107232 · Xenium
SpinalCord_38513664 · ISS / In Situ Sequencing
SpinalCord_38513664 · Xenium
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
UlcerativeColitis_38374043 CosMx 960-plex Run 1
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
10x Genomics Visium HD showcase
10x Genomics Visium HD p2 TissueArray showcase
10x Genomics Visium HD p2 TMA showcase
10x Genomics Visium HD p2 WholeSlide showcase
10x Genomics Xenium Prime 5K showcase
Xenium Human Brain Gene Expression Panel showcase
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Xenium Human Immuno-Oncology Profiling Panel showcase
Xenium Human Lung Gene Expression Panel showcase
Xenium Human Multi-Tissue and Cancer Panel showcase
Organ
Filtered
x
Brain
Spinal cord
Head and neck
Lymphoid tissue
Musculoskeletal
Skin
Breast (1,099)
Lung
Liver
Adrenal gland
Kidney
Bladder
Pancreas
Small intestine
Large intestine
Ovary
Prostate
Uterus/Cervix
Bone marrow
Heart
Disease state
Healthy/control (98)
Primary cancer (1,001)
Metastatic cancer
Non-cancer disease
Disease detail
Acute lymphoid leukemia
Acute myeloid leukemia
Adenosquamous lung carcinoma
Alzheimer's disease
Astrocytoma (Primary)
Astrocytoma (Progression from grade II/III)
Astrocytoma (Recurrent)
Autism spectrum disorder cortical organoid model
B-cell non-Hodgkin lymphoma
Brain metastasis
Brain metastasis from Bladder/urinary tract
Brain metastasis from Breast
Brain metastasis from extremity
Brain metastasis from Intestine
Brain metastasis from Lung
Brain metastasis from Ovary/Fallopian tube
Brain metastasis from Skin
Brain metastasis from Stomach/upper GI
Brain metastasis from trunk
Breast cancer (883)
Breast cancer (CCH/DCIS, ER+/PR+/HER2-1+) (1)
Breast cancer (DCIS, ER+/PR+/HER2-2+) (2)
Breast cancer (DCIS, ER-/PR-/HER2-2+) (1)
Breast cancer (DCIS, HER2-1+) (2)
Breast cancer (DCIS, HER2-2+) (1)
Breast cancer (DCIS, HER2-3+) (1)
Breast cancer (ductal carcinoma in situ) (59)
Breast cancer (ductal carcinoma in situ, HER2-1+) (1)
Breast cancer (IDC, ER+/PR+/HER2-1+) (1)
Breast cancer (IDC, ER+/PR+/HER2-2+) (1)
Breast cancer (IDC, HER2-) (1)
Breast cancer (invasive ductal carcinoma) (12)
Breast cancer (invasive ductal carcinoma, ductal carcinoma in situ) (2)
Breast cancer (invasive lobular carcinoma) (6)
Castleman disease
Cervical Cancer
Cervical cancer
Cervical cancer (squamous cell carcinoma)
Chronic myeloid leukemia bone marrow
Classical Hodgkin lymphoma
Colorectal cancer
Colorectal cancer (adenocarcinoma)
Cutaneous leishmaniasis
Developing healthy lung
Diffuse large B-cell lymphoma
Experimental autoimmune encephalomyelitis (multiple sclerosis model)
Follicular lymphoid hyperplasia
Glioblastoma
Glioblastoma (Primary)
Glioblastoma (Progression from grade II/III)
Glioblastoma (Recurrent)
Glioblastoma (Residual)
Glioma, IDH status unknown (Primary)
Head and neck squamous cell carcinoma
Healthy/control kidney
Healthy/control lung
Healthy/normal skin
Healthy adult human intestine
Healthy colon control
Healthy human (1)
Healthy intestine
Hepatocellular carcinoma
High-grade serous carcinoma
IgA nephropathy
Inflammatory bowel disease
Intrahepatic cholangiocarcinoma
Kidney cancer
Kidney cancer (papillary renal cell carcinoma)
Kidney cancer (renal cell carcinoma)
Kidney disease (AA amyloid)
Kidney disease (C3GN)
Kidney disease (CKD)
Kidney disease (DKD)
Kidney disease (DKD+FSGS)
Kidney disease (DM)
Kidney disease (DM/HTN)
Kidney disease (FSGS)
Kidney disease (HTN)
Kidney disease (IgA)
Kidney disease (MN)
Kidney disease (TMA)
Large-cell/other non-small cell lung cancer
Lung adenocarcinoma
Lung cancer
Lung cancer (invasive acinar adenocarcinoma)
Lung cancer (invasive adenocarcinoma)
Lung squamous cell carcinoma
Lymphoid tissue metastasis
Lymphoid tissue metastasis from acral
Lymphoid tissue metastasis from extremity
Lymphoid tissue metastasis from head/neck
Lymphoid tissue metastasis from Oral cavity
Lymphoid tissue metastasis from trunk
Melanocytic nevus / non-malignant skin control
Melanoma
Multiple sclerosis
Muscle-invasive bladder cancer
Neuroblastoma
Non-small cell lung cancer
Normal/healthy bone marrow control
Normal/healthy breast tissue control (97)
Normal/healthy heart control
Normal/healthy hippocampus brain tissue
Normal/healthy kidney control
Normal/healthy liver control
Normal/healthy pancreas control
Normal/healthy suprachiasmatic nucleus brain tissue
Normal/healthy tonsil control
Normal brain cortex
Normal developing human neocortex
Oral health
Oral squamous cell carcinoma
Organ-specific lymph-node control/no cancer
Organ-specific spinal-cord control/no cancer
Other non-small cell lung cancer
Ovarian cancer
Ovarian cancer (adenocarcinoma)
Ovarian cancer (clear cell adenocarcinoma)
Ovarian cancer (papillary serous carcinoma)
Pancreatic cancer
Pancreatic ductal adenocarcinoma
Periodontitis
Prostate cancer
Prostate cancer (adenocarcinoma)
Pulmonary fibrosis / interstitial lung disease (cHP)
Pulmonary fibrosis / interstitial lung disease (CPFE)
Pulmonary fibrosis / interstitial lung disease (CTD-ILD)
Pulmonary fibrosis / interstitial lung disease (ILD)
Pulmonary fibrosis / interstitial lung disease (IPAF)
Pulmonary fibrosis / interstitial lung disease (IPF)
Pulmonary fibrosis / interstitial lung disease (NSIP)
Pulmonary fibrosis / interstitial lung disease (Sarcoidosis)
Reactive Follicular Hyperplasia
Reactive follicular hyperplasia
Reactive lymph node
Rheumatoid arthritis (active)
Rheumatoid arthritis (remission)
Skin cancer
Skin metastasis
Skin metastasis from extremity
Skin metastasis from head/neck
Skin metastasis from trunk
Triple-negative breast cancer (27)
Ulcerative colitis
Ulcerative colitis (post-vedolizumab, non-responder)
Ulcerative colitis (post-vedolizumab, responder)
Ulcerative colitis (pre-vedolizumab, non-responder)
Ulcerative colitis (pre-vedolizumab, responder)
Ulcerative colitis (vedolizumab-treated)
Uterine cancer
Technique
Atera (1)
CmTSA
CosMx SMI / NanoString SMI (1)
CosMx SMI Protein (1)
CyCIF / Cyclic IF
IMC / Imaging Mass Cytometry (2)
ISS / In Situ Sequencing
MERFISH / MERSCOPE (2)
MIBI-TOF / Multiplexed Ion Beam Imaging (1)
Other ST
PCF / CODEX / PhenoCycler Fusion (1)
Stereo-seq / Stereo-seq Spatial Transcriptomics
Visium HD (3)
Xenium (3)
Modality
Spatial proteomics (5)
Spatial transcriptomics (10)
Sample
Atera_10xGenomics__Atera__WTA_Preview_FFPE_Breast_Cancer
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Breast_Cancer
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C06
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C06
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C06
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C06
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C06
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C06
Visium_HD_10xGenomics__Visium_HD__Visium_HD_FF_Human_Breast_Cancer
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fixed_Frozen
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Breast_Cancer_FFPE
BRCA_31959985__IMC__BaselTMA_SP41_100_X15Y5__gate014
BRCA_31959985__IMC__BaselTMA_SP41_101_X10Y8__gate055
BRCA_31959985__IMC__BaselTMA_SP41_104_X7Y4__gate064
BRCA_31959985__IMC__BaselTMA_SP41_104_X8Y4__gate069
BRCA_31959985__IMC__BaselTMA_SP41_104_X8Y4__gate101
BRCA_31959985__IMC__BaselTMA_SP41_106_X2Y9__gate123
BRCA_31959985__IMC__BaselTMA_SP41_112_X5Y8__gate118
BRCA_31959985__IMC__BaselTMA_SP41_114_X13Y4__gate005
BRCA_31959985__IMC__BaselTMA_SP41_114_X14Y4__gate010
BRCA_31959985__IMC__BaselTMA_SP41_117_X13Y3__gate006
BRCA_31959985__IMC__BaselTMA_SP41_117_X14Y3__gate011
BRCA_31959985__IMC__BaselTMA_SP41_11_X13Y7__gate031
BRCA_31959985__IMC__BaselTMA_SP41_126_X14Y7__gate034
BRCA_31959985__IMC__BaselTMA_SP41_129_X7Y8__gate046
BRCA_31959985__IMC__BaselTMA_SP41_133_X3Y6__gate114
BRCA_31959985__IMC__BaselTMA_SP41_134_X3Y8__gate112
BRCA_31959985__IMC__BaselTMA_SP41_135_X8Y5__gate068
BRCA_31959985__IMC__BaselTMA_SP41_141_X11Y2__gate026
BRCA_31959985__IMC__BaselTMA_SP41_141_X12Y2__gate002
BRCA_31959985__IMC__BaselTMA_SP41_14_X1Y8__gate115
BRCA_31959985__IMC__BaselTMA_SP41_153_X7Y5__gate063
BRCA_31959985__IMC__BaselTMA_SP41_159_X11Y4__gate083
BRCA_31959985__IMC__BaselTMA_SP41_159_X12Y4__gate029
BRCA_31959985__IMC__BaselTMA_SP41_165_X5Y6__gate121
BRCA_31959985__IMC__BaselTMA_SP41_166_X15Y4__gate015
BRCA_31959985__IMC__BaselTMA_SP41_177_X16Y4__gate019
BRCA_31959985__IMC__BaselTMA_SP41_177_X16Y4__gate020
BRCA_31959985__IMC__BaselTMA_SP41_177_X16Y5__gate021
BRCA_31959985__IMC__BaselTMA_SP41_186_X5Y4__gate096
BRCA_31959985__IMC__BaselTMA_SP41_186_X6Y4__gate100
BRCA_31959985__IMC__BaselTMA_SP41_187_X3Y2__gate091
BRCA_31959985__IMC__BaselTMA_SP41_187_X4Y2__gate095
BRCA_31959985__IMC__BaselTMA_SP41_18_X13Y5__gate004
BRCA_31959985__IMC__BaselTMA_SP41_191_X15Y7__gate036
BRCA_31959985__IMC__BaselTMA_SP41_196_X5Y7__gate119
BRCA_31959985__IMC__BaselTMA_SP41_203_X8Y8__gate049
BRCA_31959985__IMC__BaselTMA_SP41_206_X1Y2__gate105
BRCA_31959985__IMC__BaselTMA_SP41_206_X2Y2__gate088
BRCA_31959985__IMC__BaselTMA_SP41_20_X12Y5__gate028
BRCA_31959985__IMC__BaselTMA_SP41_211_X4Y6__gate117
BRCA_31959985__IMC__BaselTMA_SP41_212_X1Y9__gate125
BRCA_31959985__IMC__BaselTMA_SP41_214_X15Y6__gate037
BRCA_31959985__IMC__BaselTMA_SP41_216_X1Y6__gate122
BRCA_31959985__IMC__BaselTMA_SP41_218_X10Y4__gate077
BRCA_31959985__IMC__BaselTMA_SP41_218_X10Y4__gate104
BRCA_31959985__IMC__BaselTMA_SP41_218_X9Y4__gate073
BRCA_31959985__IMC__BaselTMA_SP41_218_X9Y4__gate103
BRCA_31959985__IMC__BaselTMA_SP41_219_X8Y7__gate050
BRCA_31959985__IMC__BaselTMA_SP41_220_X10Y5__gate076
BRCA_31959985__IMC__BaselTMA_SP41_224_X3Y7__gate113
BRCA_31959985__IMC__BaselTMA_SP41_227_X9Y6__gate054
BRCA_31959985__IMC__BaselTMA_SP41_228_X7Y3__gate065
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate045
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate061
BRCA_31959985__IMC__BaselTMA_SP41_234_X10Y6__gate057
BRCA_31959985__IMC__BaselTMA_SP41_237_X16Y6__gate039
BRCA_31959985__IMC__BaselTMA_SP41_238_X7Y1__gate067
BRCA_31959985__IMC__BaselTMA_SP41_238_X8Y1__gate071
BRCA_31959985__IMC__BaselTMA_SP41_239_X11Y3__gate025
BRCA_31959985__IMC__BaselTMA_SP41_239_X11Y3__gate084
BRCA_31959985__IMC__BaselTMA_SP41_239_X12Y3__gate001
BRCA_31959985__IMC__BaselTMA_SP41_247_X13Y6__gate032
BRCA_31959985__IMC__BaselTMA_SP41_249_X3Y9__gate124
BRCA_31959985__IMC__BaselTMA_SP41_24_X5Y2__gate098
BRCA_31959985__IMC__BaselTMA_SP41_24_X6Y2__gate062
BRCA_31959985__IMC__BaselTMA_SP41_254_X11Y6__gate060
BRCA_31959985__IMC__BaselTMA_SP41_255_X12Y8__gate040
BRCA_31959985__IMC__BaselTMA_SP41_256_X9Y7__gate053
BRCA_31959985__IMC__BaselTMA_SP41_257_X3Y1__gate092
BRCA_31959985__IMC__BaselTMA_SP41_259_X10Y3__gate078
BRCA_31959985__IMC__BaselTMA_SP41_263_X1Y4__gate102
BRCA_31959985__IMC__BaselTMA_SP41_263_X2Y4__gate085
BRCA_31959985__IMC__BaselTMA_SP41_267_X13Y8__gate030
BRCA_31959985__IMC__BaselTMA_SP41_268_X6Y7__gate044
BRCA_31959985__IMC__BaselTMA_SP41_274_X13Y1__gate008
BRCA_31959985__IMC__BaselTMA_SP41_274_X14Y1__gate013
BRCA_31959985__IMC__BaselTMA_SP41_276_X9Y8__gate052
BRCA_31959985__IMC__BaselTMA_SP41_277_X12Y6__gate042
BRCA_31959985__IMC__BaselTMA_SP41_280_X9Y5__gate072
BRCA_31959985__IMC__BaselTMA_SP41_282_X1Y3__gate108
BRCA_31959985__IMC__BaselTMA_SP41_282_X2Y3__gate086
BRCA_31959985__IMC__BaselTMA_SP41_282_X2Y3__gate087
BRCA_31959985__IMC__BaselTMA_SP41_283_X2Y6__gate111
BRCA_31959985__IMC__BaselTMA_SP41_284_X7Y2__gate066
BRCA_31959985__IMC__BaselTMA_SP41_284_X8Y2__gate070
BRCA_31959985__IMC__BaselTMA_SP41_2_X2Y8__gate109
BRCA_31959985__IMC__BaselTMA_SP41_31_X15Y2__gate017
BRCA_31959985__IMC__BaselTMA_SP41_31_X16Y2__gate022
BRCA_31959985__IMC__BaselTMA_SP41_33_X14Y6__gate035
BRCA_31959985__IMC__BaselTMA_SP41_37_X7Y6__gate048
BRCA_31959985__IMC__BaselTMA_SP41_38_X4Y7__gate116
BRCA_31959985__IMC__BaselTMA_SP41_39_X1Y7__gate120
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BRCA_35122013__IMC__MB-0405__core1__image504
BRCA_35122013__IMC__MB-0405__core1__image507
BRCA_35122013__IMC__MB-0406__core1__image241
BRCA_35122013__IMC__MB-0408__core1__image215
BRCA_35122013__IMC__MB-0409__core1__image206
BRCA_35122013__IMC__MB-0410__core1__image423
BRCA_35122013__IMC__MB-0411__core1__image107
BRCA_35122013__IMC__MB-0412__core1__image196
BRCA_35122013__IMC__MB-0413__core1__image480
BRCA_35122013__IMC__MB-0414__core1__image184
BRCA_35122013__IMC__MB-0415__core1__image167
BRCA_35122013__IMC__MB-0416__core1__image224
BRCA_35122013__IMC__MB-0416__core1__image225
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Disease detail
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Organ: Breast
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1,099 matches
1,099 curated
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Showing 1,051-1,099 of 1,099
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Sample
Organ
Disease state
Technique
Cells
Spatial module
Curation
MERFISH_815_Vizgen__MERFISH__MERFISH815BreastTMA_R2
MERFISH 815-plex Vizgen showcase
Breast
Primary cancer
MERFISH
48,900
D
I
T
Curated
MERFISH_815_Vizgen__MERFISH__MERFISH815BreastTMA_R3
MERFISH 815-plex Vizgen showcase
Breast
Primary cancer
MERFISH
54,279
D
I
T
Curated
MERFISH_815_Vizgen__MERFISH__MERFISH815BreastTMA_R4
MERFISH 815-plex Vizgen showcase
Breast
Primary cancer
MERFISH
72,219
D
I
T
Curated
MERFISH_815_Vizgen__MERFISH__MERFISH815BreastTMA_R5
MERFISH 815-plex Vizgen showcase
Breast
Primary cancer
MERFISH
79,268
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210113_Breast_Cassette11_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
173,460
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210115_Breast_Cassette15_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
141,044
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210118_Breast_Cassette14_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
113,909
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210118_Breast_Cassette14_reg2_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
74,059
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210122_Breast_Cassette7_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
60,223
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210125_Breast_Cassette5_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
16,702
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
TNBC_38194915__PCF_CODEX__210125_Breast_Cassette5_reg2_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
254,687
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210127_Breast_Cassette9_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
34,159
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210127_Breast_Cassette9_reg2_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
85,931
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210129_Breast_Cassette4_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
169,656
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210129_Breast_Cassette4_reg2_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
56,452
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210201_Breast_Cassette1_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
200,217
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210203_Breast_Cassette8_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
91,354
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210203_Breast_Cassette8_reg2_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
113,756
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210205_Breast_Cassette2_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
164,096
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210208_Breast_Cassette6_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
62,214
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210208_Breast_Cassette6_reg2_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
171,606
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210209_Breast_Cassette3_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
34,025
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210209_Breast_Cassette3_reg2_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
28,998
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
TNBC_38194915__PCF_CODEX__210210_Breast_Cassette10_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
49,826
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210210_Breast_Cassette10_reg2_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
24,928
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
TNBC_38194915__PCF_CODEX__210212_Breast_Cassette17_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
54,582
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210212_Breast_Cassette17_reg2_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
47,065
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210215_Breast_Cassette12_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
56,084
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210215_Breast_Cassette12_reg2_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
156,001
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210217_Breast_Cassette13_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
100,851
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210217_Breast_Cassette13_reg2_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
61,853
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
574,852
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_1
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
892,966
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_2
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
885,523
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_With_Addon
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
576,963
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
356,746
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC_With_Addon
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
365,604
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
254,480
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Mid
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
375,529
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
209,467
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Bot
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
358,519
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Mid
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
380,739
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Top
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Healthy/control
Xenium
301,854
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
150,145
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Mid
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
373,150
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Top
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
308,531
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
201,955
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Mid
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
335,709
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
192,898
D
I
T
Curated
Showing 1,051-1,099 of 1,099
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