scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 1,099 matches · sample view
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Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
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Organ: Breast × 1,099 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C04 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,965 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_45_X3Y3__gate090 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,949 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_201_X14Y5__gate269 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,948 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_199_X8Y5__gate329 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,943 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_244_X3Y1__gate356 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,939 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_27_X6Y6__gate194 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,934 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_62_X7Y7__gate047 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,929 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_112_X5Y8__gate118 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,927 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_28_X11Y2__gate185 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,910 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_116_X4Y4__gate365 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,910 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_254_X11Y6__gate060 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,909 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_280_X9Y5__gate072 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,909 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_1_X1Y8__gate331 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,907 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_225_X2Y9__gate338 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,904 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_50_X7Y1__gate325 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,902 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_13_X5Y8__gate188 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,901 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_46_X10Y7__gate161 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,901 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_192_X8Y5__gate203 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,893 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_126_X14Y7__gate034 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,892 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_52_X9Y3__gate074 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,892 T1T2T3T1T2T3T1T2T3
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C06 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,884 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_37_X7Y6__gate048 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,872 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_273_X6Y7__gate193 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,872 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_73_X12Y7__gate169 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,867 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_107_X4Y7__gate350 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,831 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_260_X10Y4__gate300 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,829 T1T2T3T1T2T3T1T2T3
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C02 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,824 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_148_X5Y6__gate190 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,821 T1T2T3T1T2T3T1T2T3
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C06 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,785 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_203_X8Y8__gate049 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,771 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_75_X2Y5__gate367 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,771 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_237_X16Y6__gate039 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,765 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_219_X8Y7__gate050 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,755 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_239_X11Y3__gate025 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,734 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_89_X4Y6__gate232 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,730 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_177_X16Y5__gate021 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,723 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_236_X11Y7__gate165 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,716 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_72_X11Y1__gate027 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,709 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_114_X13Y4__gate005 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,706 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_74_X15Y3__gate148 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,698 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_9_X6Y9__gate128 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,695 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_163_X1Y9__gate224 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,690 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_2_X2Y8__gate109 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,688 T1T2T3T1T2T3T1T2T3
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C03 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,683 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_182_X1Y8__gate230 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,667 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_40_X16Y7__gate038 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,662 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_252_X6Y7__gate330 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,647 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_95_X13Y2__gate256 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,640 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_47_X16Y4__gate267 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,635 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_180_X5Y2__gate311 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,619 T1T2T3T1T2T3T1T2T3