scAtria single-cell spatial atlas resource

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1,099 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Organ: Breast × 1,099 matches 1,099 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
BRCA_31959985__IMC__BaselTMA_SP42_163_X1Y9__gate224 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,690 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_164_X9Y8__gate156 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,719 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_167_X14Y8__gate133 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 351 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_169_X3Y8__gate225 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,455 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_16_X3Y4__gate240 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 523 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_16_X4Y4__gate244 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 221 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_171_X2Y7__gate220 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,801 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_174_X9Y6__gate158 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,567 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_175_X15Y5__gate139 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,329 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_175_X15Y5__gate140 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 668 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_176_X3Y7__gate226 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,769 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_178_X13Y7__gate130 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,966 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_179_X13Y8__gate129 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,186 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_181_X6Y5__gate195 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,992 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_182_X1Y8__gate230 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,667 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_183_X3Y6__gate227 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,236 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_184_X6Y8__gate192 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,380 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_185_X7Y5__gate199 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,427 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_188_X10Y5__gate163 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,617 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_189_X5Y5__gate191 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,482 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_190_X9Y5__gate159 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,686 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_192_X8Y5__gate203 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,893 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_198_X7Y8__gate196 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,607 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_208_X15Y7__gate137 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,832 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_210_X4Y5__gate233 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,488 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_215_X3Y1__gate243 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,223 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_215_X4Y1__gate247 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 159 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_217_X1Y3__gate249 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,843 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_217_X2Y3__gate239 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,060 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_223_X9Y7__gate157 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,535 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_229_X1Y7__gate234 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,053 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_232_X7Y6__gate198 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,437 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_236_X11Y7__gate165 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,716 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_240_X10Y2__gate181 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 628 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_240_X9Y2__gate176 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,523 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_251_X15Y2__gate149 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,722 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_251_X16Y2__gate152 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 436 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_253_X13Y2__gate145 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,369 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_253_X14Y2__gate147 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,319 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_25_X3Y2__gate242 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,870 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_25_X4Y2__gate246 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 328 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_261_X11Y6__gate166 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,354 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_262_X10Y8__gate160 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 218 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_264_X14Y5__gate136 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,181 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_265_X14Y1__gate153 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 141 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_273_X4Y7__gate231 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,914 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_273_X6Y7__gate193 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,872 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_275_X5Y4__gate204 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,811 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_275_X6Y4__gate208 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 53 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_279_X14Y6__gate135 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,544 T1T2T3T1T2T3T1T2T3 Curated