scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 1,099 matches · sample view
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Organ: Breast × 1,099 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
BRCA_31959985__IMC__BaselTMA_SP42_215_X3Y1__gate243 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,223 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_195_X11Y6__gate289 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,217 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_134_X3Y8__gate112 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,211 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_212_X1Y9__gate125 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,203 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_281_X8Y7__gate273 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,198 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_264_X14Y5__gate136 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,181 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_139_X1Y7__gate348 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,171 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0527__core1__image484 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,167 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_249_X3Y9__gate124 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,164 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0060__core1__image37 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,164 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_53_X6Y8__gate043 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,150 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_69_X5Y3__gate097 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,147 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_24_X5Y2__gate098 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,143 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_233_X13Y7__gate372 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,139 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_214_X15Y6__gate037 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,123 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0486__core1__image249 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,088 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_270_X3Y8__gate335 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,080 T1T2T3T1T2T3T1T2T3
BRCA_35063072__MIBI_TOF__Point4106 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 2,079 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0013__core1__image371 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,062 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_250_X2Y3__gate359 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,061 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0921__core1__image381 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,061 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_217_X2Y3__gate239 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,060 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_238_X8Y1__gate071 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,047 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_104_X8Y4__gate101 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,046 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_83_X14Y2__gate012 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,042 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_170_X3Y3__gate360 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,024 T1T2T3T1T2T3T1T2T3
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C02 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,022 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_8_X5Y9__gate127 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,996 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_181_X6Y5__gate195 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,992 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_71_X8Y8__gate200 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,976 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_235_X12Y2__gate295 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,968 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_178_X13Y7__gate130 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,966 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_186_X6Y4__gate100 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,965 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_209_X11Y1__gate310 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,962 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0283__core2__image540 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,952 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_243_X13Y3__gate260 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,947 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0429__core1__image75 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,943 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_61_X3Y4__gate089 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,939 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_125_X5Y7__gate351 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,934 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_87_X15Y4__gate266 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,931 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_99_X5Y7__gate189 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,923 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_273_X4Y7__gate231 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,914 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_6_X11Y1__gate186 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,900 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_86_X15Y3__gate016 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,890 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0312__core1__image178 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,876 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_267_X13Y8__gate030 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,867 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_206_X2Y2__gate088 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,853 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_18_X13Y5__gate004 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,851 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0413__core1__image480 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,845 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_104_X8Y4__gate069 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,841 T1T2T3T1T2T3T1T2T3