scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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Organ: Large intestine × 855 matches 855 curated Download sample CSV
Visium HD Spatial transcriptomics Curated

VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Colon_Cancer

Dataset: 10x Genomics Visium HD p2 TissueArray showcase

Organ: Large intestine

Disease detail: Colorectal cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
234,929
Curation
Curated
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_11mm_Human_Colon_Cancer_Fresh_Frozen

Dataset: 10x Genomics Visium HD p2 WholeSlide showcase

Organ: Large intestine

Disease detail: Colorectal cancer

Disease state: Primary cancer

Cells
1,302,549
Curation
Curated
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Colon_Cancer

Dataset: 10x Genomics Visium HD p2 WholeSlide showcase

Organ: Large intestine

Disease detail: Colorectal cancer

Disease state: Primary cancer

Cells
381,174
Curation
Curated
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer

Dataset: 10x Genomics Visium HD showcase

Organ: Large intestine

Disease detail: Colorectal cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
220,703
Curation
Curated
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1

Dataset: 10x Genomics Visium HD showcase

Organ: Large intestine

Disease detail: Colorectal cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
217,921
Curation
Curated
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5

Dataset: 10x Genomics Visium HD showcase

Organ: Large intestine

Disease detail: Colorectal cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
151,153
Curation
Curated
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5

Dataset: 10x Genomics Visium HD showcase

Organ: Large intestine

Disease detail: Colorectal cancer (adenocarcinoma)

Disease state: Primary cancer

Cells
138,127
Curation
Curated
Spatial
Open dataset Spatial outputs not yet published for this sample.
CosMx SMI / NanoString SMI Spatial transcriptomics Curated

CosMxWTx_Bruker__CosMx_SMI__CosMxColonCancerWTx_Bruker

Dataset: Bruker CosMx WTx FFPE showcase

Organ: Large intestine

Disease detail: Colorectal cancer

Disease state: Primary cancer

Cells
493,834
Curation
Curated
Spatial
Open dataset Spatial outputs not yet published for this sample.