scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 855 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Organ: Large intestine × 855 matches 855 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Colon_Cancer 10x Genomics Visium HD p2 TissueArray showcase Large intestine Primary cancer Visium HD 234,929 Curated
VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_11mm_Human_Colon_Cancer_Fresh_Frozen 10x Genomics Visium HD p2 WholeSlide showcase Large intestine Primary cancer Visium HD 1,302,549 Curated
VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Colon_Cancer 10x Genomics Visium HD p2 WholeSlide showcase Large intestine Primary cancer Visium HD 381,174 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 220,703 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 217,921 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 151,153 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 75,410 T1T2T3T1T2T3T1T2T3 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 138,127 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxColonCancerWTx_Bruker Bruker CosMx WTx FFPE showcase Large intestine Primary cancer CosMx 493,834 Curated
CRC_32763154__PCF_CODEX__reg001_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,164 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg001_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 360 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg002_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,422 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg002_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,670 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg003_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,310 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg003_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,252 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg004_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,485 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg004_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,969 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg005_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,583 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg005_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,678 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg006_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,390 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg006_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,215 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg007_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 3,181 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg007_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,375 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg008_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,418 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg008_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 3,370 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg009_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,434 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg009_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 3,420 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg010_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,091 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg010_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,266 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg011_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,757 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg011_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 922 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg012_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,774 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg012_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 482 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg013_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,631 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg013_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,005 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg014_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 969 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg014_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,130 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg015_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,491 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg015_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,654 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg016_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,967 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg016_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,422 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg017_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,698 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg017_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,834 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg018_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,035 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg018_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,525 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg019_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 1,555 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg019_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 107 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg020_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,195 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg020_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,684 T1T2T3T1T2T3T1T2T3 Curated
CRC_32763154__PCF_CODEX__reg021_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 2,678 T1T2T3T1T2T3T1T2T3 Curated