scAtria single-cell spatial atlas resource

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515 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Organ: Liver × 515 matches 513 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
ICC_41723121__CosMx_SMI__Liver_2CT LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 62,260 Curated
ICC_41723121__CosMx_SMI__Liver_3CB LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 174,833 Curated
ICC_41723121__CosMx_SMI__Liver_3CT LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 41,272 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP1 MERFISH 500-plex Vizgen showcase Liver Primary cancer MERFISH 568,355 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP2 MERFISH 500-plex Vizgen showcase Liver Primary cancer MERFISH 598,141 Curated
SPATCH_41107232__CosMx_SMI__SPATCH_CosMx_HCC SPATCH_41107232 · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 237,030 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 160,879 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 141,376 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 132,648 Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_HCC SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Liver Primary cancer Stereo 390,774 Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_HCC SPATCH_41107232 · Xenium Liver Primary cancer Xenium 271,687 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_cancer_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Primary cancer Xenium 162,628 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_nondiseased_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Healthy/control Xenium 239,271 Curated
Liver_41986723__MERFISH__M5 Liver_41986723 · MERFISH / MERSCOPE Liver Healthy/control MERFISH 102,914 Source
Liver_41986723__MERFISH__M8 Liver_41986723 · MERFISH / MERSCOPE Liver Healthy/control MERFISH 207,498 Source