scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 868 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Organ: Lung × 868 matches 847 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
NSCLC_38242124__IMC__178_C7,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 434 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__178_C7,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 6,979 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__178_C7,17 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,366 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__178_C8,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 222 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__178_C8,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 7,014 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__178_C8,17 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,871 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__86_C2,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,996 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__86_C3,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,663 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__86_C4,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,103 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__86_C7,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,956 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__86_C8,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 941 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C1,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,764 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C1,17 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,021 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C2,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,954 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C2,17 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,544 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C3,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,307 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C4,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 6,103 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C4,17 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 385 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C5,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,093 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C5,17 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 598 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C6,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 452 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C613 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,117 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C7,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,929 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C7,17 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,224 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C8,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 888 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__87_C8,17 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 734 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C1,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,630 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C2,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,403 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C3,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,881 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C3,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 682 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C4,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,648 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C4,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 540 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C5,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,840 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C5,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 363 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C6,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 6,300 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C6,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,927 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C7,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 866 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C8,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,753 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__88_C8,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,455 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_0 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,929 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_1 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,907 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_10 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,390 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_100 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,323 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_101 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,344 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_102 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,742 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_103 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,303 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_104 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,806 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_105 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,996 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_106 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,384 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_107 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,507 T1T2T3T1T2T3T1T2T3 Curated