scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 868 matches · sample view
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Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
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Organ: Lung × 868 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
GSM8876951_slide_2 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P4_On_slide_2 Lung Metastatic cancer CosMx 66,475
NSCLC_40220761__CosMx_SMI__Section_28 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 59,564
NSCLC_40220761__CosMx_SMI__Section_22 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 59,208
NSCLC_40220761__CosMx_SMI__Section_04 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 58,805
NSCLC_40220761__CosMx_SMI__Section_10 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 58,228
NSCLC_40220761__CosMx_SMI__Section_16 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 57,435
NSCLC_40220761__CosMx_SMI__Section_34 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 56,959
GSM8876951_slide_2 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P4_Late_slide_2 Lung Metastatic cancer CosMx 51,351
GSM8876961_slide_12 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P12_On_slide_12 Lung Metastatic cancer CosMx 34,312
GSM8876960_slide_11 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P12_Pre_slide_11 Lung Metastatic cancer CosMx 29,982
GSM8876951_slide_2 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P4_Pre_slide_2 Lung Metastatic cancer CosMx 26,103
8.5 pcw selected area DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion DevelopingLung_39477961__PCF_CODEX__8.5w_selectedarea Lung Healthy/control CODEX 23,296
GSM8876953_slide_4 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P6_Pre_slide_4 Lung Metastatic cancer CosMx 15,046
GSM8876958_slide_9 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P6_On_slide_9 Lung Metastatic cancer CosMx 13,361
6 pcw selected area DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion DevelopingLung_39477961__PCF_CODEX__6w_selectedarea Lung Healthy/control CODEX 13,167
GSM8876950_slide_1 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P6_On_slide_1 Lung Metastatic cancer CosMx 8,765
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P6_On_slide_13 Lung Metastatic cancer CosMx 4,592
LUAD_36725934__IMC__LUAD_D304 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 0