scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 868 matches · sample view
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Customized columns 7
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Organ: Lung × 868 matches 847 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
LUAD_36725934__IMC__LUAD_D394 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,636 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D395 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,407 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D396 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,112 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D397 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,078 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D398 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,605 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D399 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,515 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D400 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,378 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D401 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,945 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D402 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,637 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D403 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,601 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D404 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,027 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D405 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,354 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D406 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,287 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D407 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,406 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D408 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,172 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D409 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 6,939 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D410 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,929 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D411 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,943 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D412 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,525 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D413 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,480 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D414 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,564 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D415 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,929 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D416 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,886 T1T2T3T1T2T3T1T2T3 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHLungCancerP1 MERFISH 500-plex Vizgen showcase Lung Primary cancer MERFISH 353,762 Curated
MERFISH_500_Vizgen__MERFISH__MERFISHLungCancerP2 MERFISH 500-plex Vizgen showcase Lung Primary cancer MERFISH 836,739 Curated
NSCLC_38242124__IMC__175_A3,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,091 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_A4,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,380 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_A5,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,742 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_A6,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,632 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_B1,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,076 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_B1,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,725 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_B2,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,504 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_B2,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,020 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C1,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,953 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C1,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 6,299 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C2,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 973 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C2,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 7,105 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C3,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 283 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C3,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,848 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C4,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 249 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C4,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 6,459 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C5,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,378 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C5,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,027 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C6,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,193 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C6,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 6,448 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C7,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,553 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C7,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,544 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C8,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,196 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__175_C8,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,858 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_38242124__IMC__176_B3,10 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,056 T1T2T3T1T2T3T1T2T3 Curated