scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 2,620 matches · sample view
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Organ: Lymphoid tissue × 2,620 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
NSCLC_38242124__IMC__176_B4,2 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,146 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_C2,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,144 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_C3,7 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,140 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_C7,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,135 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_A2,1 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,130 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_B8,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,127 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_C7,8 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,127 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_C3,10 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,126 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_A4,9 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,125 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_A6,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,124 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_B4,3 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,121 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_C7,9 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,120 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_B5,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,118 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_A1,7 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,115 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_C8,11 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,114 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_A1,9 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,113 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_A3,6 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,109 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_C7,7 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,107 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_A8,12 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,104 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_C1,7 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,101 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_C8,12 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,101 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_B6,7 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,100 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_C4,10 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,099 T1T2T3T1T2T3T1T2T3
HNSCCDiscovery_41616773__PCF_CODEX__522_S2reg001 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 4,098 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_C5,12 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,098 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_A4,2 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,091 T1T2T3T1T2T3T1T2T3
HNSCCDiscovery_41616773__PCF_CODEX__523_S1reg058 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 4,090 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_C1,9 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,090 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_A7,11 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,089 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_A2,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,085 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_C2,6 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,083 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_A5,11 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,081 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_C4,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,073 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_B8,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,072 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_B1,3 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,072 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_A5,2 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,071 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_A5,5 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,069 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_A4,17 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,066 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_A4,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,066 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_C3,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,062 T1T2T3T1T2T3T1T2T3
Melanoma_35363543__IMC__33RD Melanoma_35363543 · IMC / Imaging Mass Cytometry Lymph node metastasis Metastatic cancer IMC 4,061 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_A2,1 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,058 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_C5,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,056 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_A5,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,056 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_B5,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,056 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_A7,1 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,047 T1T2T3T1T2T3T1T2T3
HNSCCDiscovery_41616773__PCF_CODEX__522_S2reg020 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 4,045 T1T2T3T1T2T3T1T2T3
Melanoma_35363543__IMC__37RD Melanoma_35363543 · IMC / Imaging Mass Cytometry Lymph node metastasis Metastatic cancer IMC 4,032 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_C5,2 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,032 T1T2T3T1T2T3T1T2T3
cHL_41923627__CosMx_SMI__FOV_8_TMA_98.3 cHL_41923627 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 4,031 T1T2T3T1T2T3T1T2T3