scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 2,620 matches · sample view
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Organ: Lymphoid tissue × 2,620 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
NSCLC_38242124__IMC__175_B2,9 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,016 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_C8,1 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,014 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_A3,9 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,014 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_B8,12 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,012 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_A5,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,010 T1T2T3T1T2T3T1T2T3
cHL_41923627__CosMx_SMI__FOV_21_HTMA_528 cHL_41923627 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 4,008 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_A1,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,008 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_A7,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,008 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_C6,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,008 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_A7,6 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,004 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_A1,10 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 4,001 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_C4,11 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,999 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_B5,7 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,997 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_A1,9 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,996 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_A3,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,996 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_A4,10 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,991 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_B4,12 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,991 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_B8,3 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,990 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_B1,2 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,987 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_B5,5 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,985 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_B8,2 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,985 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_C3,7 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,981 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_A5,11 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,978 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_C2,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,978 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_B1,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,976 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_A5,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,974 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_B5,12 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,967 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_A6,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,966 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_A6,16 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,966 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_B3,1 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,965 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_B7,11 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,962 T1T2T3T1T2T3T1T2T3
HNSCCDiscovery_41616773__PCF_CODEX__523_S1reg065 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 3,959 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_B6,5 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,954 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_B6,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,953 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_C7,11 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,953 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_A5,12 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,952 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_B8,8 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,952 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__175_C6,6 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,952 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_B2,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,952 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_C1,12 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,951 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_B6,3 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,951 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_A4,8 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,946 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_B5,2 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,944 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_A4,14 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,942 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_A8,17 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,942 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg033 HNSCC_41616773 · Other ST Lymphoid tissue Primary cancer Other ST 3,938 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_Rochester_c17_FOV17 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,936 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_B4,12 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,934 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_B5,11 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,933 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__176_C3,10 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 3,932 T1T2T3T1T2T3T1T2T3