scAtria single-cell spatial atlas resource

Browse

? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
Card Table
664 Samples
Search
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 664 matches · sample view
Reset
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
Organ: Lymphoid tissue × 664 matches 658 curated Download sample CSV
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lymph_Node_FFPE

Dataset: 10x Genomics Visium HD showcase

Organ: Lymphoid tissue

Disease detail: Healthy human

Disease state: Healthy/control

Cells
300,211
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Visium HD Spatial transcriptomics Curated

Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Tonsil_Fresh_Frozen

Dataset: 10x Genomics Visium HD showcase

Organ: Lymphoid tissue

Disease detail: Reactive Follicular Hyperplasia

Disease state: Healthy/control

Cells
959,759
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
Xenium Spatial transcriptomics Curated

Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lymph_Node_Reactive_FFPE

Dataset: 10x Genomics Xenium Prime 5K showcase

Organ: Lymphoid tissue

Disease detail: Reactive lymph node

Disease state: Non-cancer disease

Cells
708,983
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_1reg001

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
148,293
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_1reg002

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
172,066
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_1reg003

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
152,635
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_1reg005

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
98,101
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_1reg006

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
127,265
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_2reg001

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
206,365
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_2reg002

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
176,664
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

B-NHL_38379051__PCF_CODEX__191_2reg003

Dataset: B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion

Organ: Lymphoid tissue

Disease detail: B-cell non-Hodgkin lymphoma

Disease state: Primary cancer

Cells
174,640
Curation
Curated
DEG
NA
Spatial
Open dataset Spatial outputs not yet published for this sample.