scAtria single-cell spatial atlas resource

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2 Datasets
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Organ: Musculoskeletal × 2 matches 1 curated
Xenium Spatial transcriptomics Curated

Xenium Human Multi-Tissue and Cancer Panel showcase

Dataset key: XeniumMulti_10xGenomics__Xenium

Bone marrow 2/20 Heart 1/20 Kidney 3/20 Liver 2/20 Lung 2/20 Lymphoid tissue 3/20 Musculoskeletal 1/20 Ovary 1/20 Pancreas 3/20 Skin 2/20

Disease detail: Healthy/control: Healthy human, Primary cancer: Lung cancer, Non-cancer disease: Follicular lymphoid hyperplasia

Healthy/control 9/20 Primary cancer 9/20 Non-cancer disease 2/20
Samples
20
Cells
5,095,938
Curation
Curated
DEG
NA
Spatial
0/20
Open dataset
CosMx SMI / NanoString SMI Spatial transcriptomics

RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI

Dataset key: RheumatoidArthritis_39609125__CosMx_SMI

Musculoskeletal 60

Disease detail: Non-cancer disease: Rheumatoid arthritis (active)

Non-cancer disease 60
Samples
60
Cells
110,567
Curation
Source
DEG
NA
Spatial
0/60
Open dataset