scAtria single-cell spatial atlas resource

Browse

? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
Card Table
4 Datasets
Search
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 4 matches · dataset view
Reset
Columns 8
Dataset table columns Selections persist in the URL and manifest download.
Reset columns
Organ: Head and neck × 4 matches 3 curated
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

HNSCC_41616773 PCF discovery cohort

Dataset key: HNSCCDiscovery_41616773__PCF_CODEX

Head and neck 189/390 Lymph node metastasis 138/390 Lymphoid tissue 63/390

Disease detail: Primary cancer: Head and neck squamous cell carcinoma, Metastatic cancer: Lymphoid tissue metastasis from Oral cavity, Healthy/control: Organ-specific lymph-node control/no cancer

Primary cancer 189/390 Metastatic cancer 138/390 Healthy/control 63/390
Samples
390
Cells
1,556,569
Curation
Curated
DEG
NA
Spatial
390/390
Open dataset
PCF / CODEX / PhenoCycler Fusion Spatial proteomics Curated

HNSCC_41616773 PCF validation cohort

Dataset key: HNSCCValidation_41616773__PCF_CODEX

Head and neck 11/34 Lymph node metastasis 10/34 Lymphoid tissue 13/34

Disease detail: Primary cancer: Head and neck squamous cell carcinoma, Metastatic cancer: Lymphoid tissue metastasis from Oral cavity, Healthy/control: Organ-specific lymph-node control/no cancer

Primary cancer 15/34 Metastatic cancer 10/34 Healthy/control 9/34
Samples
34
Cells
745,842
Curation
Curated
DEG
NA
Spatial
13/34
Open dataset
IMC / Imaging Mass Cytometry Spatial proteomics Curated

OSCC_41707652 · IMC / Imaging Mass Cytometry

Dataset key: OSCC_41707652__IMC

Head and neck 92

Disease detail: Primary cancer: Oral squamous cell carcinoma

Primary cancer 92
Samples
92
Cells
708,261
Curation
Curated
DEG
Caveat
Spatial
92/92
Open dataset