scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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Organ: Skin × 242 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hSkin_nondiseased_section_2_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Skin Healthy/control Xenium 90,106 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT42_3_Post-Dab+Tra_Pre-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 81,606 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT208_5_On-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 79,236 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__A_GZ2 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 76,796 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT272_2_Post-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 75,585 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202304141439_MSSM-Ji-Skin2-VA227_VMSC02701_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 71,958 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT208_3_Post-Ipi_Pre-Pembro-1 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 70,757 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__D_GZ4 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 70,488 T1T2T3T1T2T3T1T2T3
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hSkin_nondiseased_section_1_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Skin Healthy/control Xenium 68,476 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT35_2_On-Enc+Bin Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 65,411 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT530_1_Pre-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 62,024 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202308311115_D041-43--lastprobes-083123_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 59,743 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__F_GZ6 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 55,850 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202306121431_AH21-NS-ConcClear-061223_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 48,053 T1T2T3T1T2T3T1T2T3
CutaneousLeishmaniasis_40371647__CosMx_SMI__P3 CutaneousLeishmaniasis_40371647 · CosMx SMI / NanoString SMI Skin Non-cancer disease CosMx 46,226 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__E_GZ3 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 42,826 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT208_1_Pre-Ipi Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 42,010 T1T2T3T1T2T3T1T2T3
CutaneousLeishmaniasis_40371647__CosMx_SMI__P6 CutaneousLeishmaniasis_40371647 · CosMx SMI / NanoString SMI Skin Non-cancer disease CosMx 39,375 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT208_2_On-Ipi Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 37,217 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__I_GZ10 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 36,005 T1T2T3T1T2T3T1T2T3
CutaneousLeishmaniasis_40371647__CosMx_SMI__P5 CutaneousLeishmaniasis_40371647 · CosMx SMI / NanoString SMI Skin Non-cancer disease CosMx 34,139 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202306070957_AH21-NSFFPE-060723-AH_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 34,056 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202404041030_D165--1-6--04042024_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 33,650 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT42_4_On-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 33,064 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT530_1_On-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 26,373 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202312131041_D077--1-4--12132023_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 24,738 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 24,405 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202404041030_D165--1-6--04042024_VMSC02301_region_4 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 24,183 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301_region_4 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 23,992 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202404151153_Panniculectomy--D048-D142---04152024_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 22,169 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202404041030_D165--1-6--04042024_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 20,582 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT208_4_Post-Ipi_Pre-Pembro-2 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 20,140 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT272_1_Pre-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 19,554 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT42_2_On-Enc+Bin_Pre-Ipi Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 17,815 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__C_GZ5 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 16,816 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202407031037_D134-D173--OTR-NS--07032024_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 16,460 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202404241001_D165--7-12--04242024_VMSC02301_region_5 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 15,230 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202403281041_D145--1-6--03282024_VMSC02301_region_4 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 14,731 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202312131041_D077--1-4--12132023_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 14,572 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202404241001_D165--7-12--04242024_VMSC02301_region_4 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 14,413 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202404241001_D165--7-12--04242024_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 13,824 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202405141034_D149--1-6--rerun--05142024_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 13,638 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202404041030_D165--1-6--04042024_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 12,846 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202403180949_D107--7-12--03182024_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 12,491 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202310301133_D082--1-4--10302023_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 12,166 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202402221100_D151-1-6--fullrun--rerun--02222024_VMSC02301_region_5 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 12,043 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202404241001_D165--7-12--04242024_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 11,895 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202309281027_AutopsyBFFPE092823_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 11,293 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202404111130_D145--7-12--04112024_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 11,077 T1T2T3T1T2T3T1T2T3
CutaneousLeishmaniasis_40371647__CosMx_SMI__P4 CutaneousLeishmaniasis_40371647 · CosMx SMI / NanoString SMI Skin Non-cancer disease CosMx 11,061 T1T2T3T1T2T3T1T2T3