scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 6,745 matches · sample view
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Customized columns 6
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Search: CervicalCancer_CmTSA_41807362 × 6,745 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
MERFISH_815_Vizgen__MERFISH__MERFISH815BreastTMA_R1 MERFISH 815-plex Vizgen showcase Breast Primary cancer MERFISH 92,461 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210203_Breast_Cassette8_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 91,354 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210127_Breast_Cassette9_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 85,931 T1T2T3T1T2T3T1T2T3
Neuroblastoma_41918107__PCF_CODEX__Neuro_c1__TMA1__core_4 Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion Adrenal gland Primary cancer CODEX 84,805 T1T2T3T1T2T3T1T2T3
B-NHL_38379051__PCF_CODEX__191_3reg004 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 84,060 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT42_3_Post-Dab+Tra_Pre-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 81,606 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_19 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 79,862 T1T2T3T1T2T3T1T2T3
MERFISH_815_Vizgen__MERFISH__MERFISH815BreastTMA_R5 MERFISH 815-plex Vizgen showcase Breast Primary cancer MERFISH 79,268 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT208_5_On-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 79,236 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__A_GZ2 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 76,796 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT272_2_Post-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 75,585 T1T2T3T1T2T3T1T2T3
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 75,410 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_7 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 74,444 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210118_Breast_Cassette14_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 74,059 T1T2T3T1T2T3T1T2T3
MERFISH_815_Vizgen__MERFISH__MERFISH815BreastTMA_R4 MERFISH 815-plex Vizgen showcase Breast Primary cancer MERFISH 72,219 T1T2T3T1T2T3T1T2T3
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice2 MERFISH 500-plex Vizgen showcase Ovary Primary cancer MERFISH 71,381 T1T2T3T1T2T3T1T2T3
HCC_41723121__CosMx_SMI__Liver_4HT LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 71,251 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_4 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 71,064 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT208_3_Post-Ipi_Pre-Pembro-1 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 70,757 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__D_GZ4 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 70,488 T1T2T3T1T2T3T1T2T3
HCC_41723121__CosMx_SMI__Liver_2HB LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 70,302 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT35_2_On-Enc+Bin Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 65,411 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_13 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 64,736 T1T2T3T1T2T3T1T2T3
cHL_41923627__PCF_CODEX__Rochester_16_neg cHL_41923627 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 64,674 T1T2T3T1T2T3T1T2T3
Neuroblastoma_41918107__PCF_CODEX__Neuro_c5__TMA5__core_29 Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion Adrenal gland Primary cancer CODEX 64,504 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_6 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 64,236 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_23 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 63,060 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_18 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 63,003 T1T2T3T1T2T3T1T2T3
Neuroblastoma_41918107__PCF_CODEX__Neuro_c1__TMA1__core_9 Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion Adrenal gland Primary cancer CODEX 62,895 T1T2T3T1T2T3T1T2T3
ICC_41723121__CosMx_SMI__Liver_2CT LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 62,260 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210208_Breast_Cassette6_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 62,214 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__PT530_1_Pre-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 62,024 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210217_Breast_Cassette13_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 61,853 T1T2T3T1T2T3T1T2T3
BoneMarrow_38714197__PCF_CODEX__SB67_NBM46_AML1_382_CODEX_Mesmer BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Primary cancer CODEX 61,506 T1T2T3T1T2T3T1T2T3
ICC_41723121__CosMx_SMI__Liver_2CB LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 60,720 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210122_Breast_Cassette7_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 60,223 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_15 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 60,111 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_11 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 60,038 T1T2T3T1T2T3T1T2T3
BoneMarrow_38714197__PCF_CODEX__SB67_NBM44_AML2_191_CODEX_Mesmer BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Primary cancer CODEX 56,978 T1T2T3T1T2T3T1T2T3
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hKidney_cancer_section Xenium Human Multi-Tissue and Cancer Panel showcase Kidney Primary cancer Xenium 56,510 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210129_Breast_Cassette4_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 56,452 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210215_Breast_Cassette12_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 56,084 T1T2T3T1T2T3T1T2T3
Melanoma_41916292__CyCIF__F_GZ6 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 55,850 T1T2T3T1T2T3T1T2T3
Neuroblastoma_41918107__PCF_CODEX__Neuro_c3__TMA3__core_26 Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion Adrenal gland Primary cancer CODEX 54,952 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210212_Breast_Cassette17_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 54,582 T1T2T3T1T2T3T1T2T3
MERFISH_815_Vizgen__MERFISH__MERFISH815BreastTMA_R3 MERFISH 815-plex Vizgen showcase Breast Primary cancer MERFISH 54,279 T1T2T3T1T2T3T1T2T3
cHL_41923627__PCF_CODEX__Rochester_6_pos cHL_41923627 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 54,202 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_14 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 50,868 T1T2T3T1T2T3T1T2T3
cHL_41923627__PCF_CODEX__Rochester_7_pos cHL_41923627 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 50,817 T1T2T3T1T2T3T1T2T3
Neuroblastoma_41918107__PCF_CODEX__Neuro_c3__TMA3__core_22 Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion Adrenal gland Primary cancer CODEX 50,801 T1T2T3T1T2T3T1T2T3