scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 6,288 matches · sample view
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Customized columns 7
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Search: primary cancer × 6,288 matches 6,263 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_31959985__IMC__BaselTMA_SP41_31_X15Y2__gate017 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,312 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_33_X14Y6__gate035 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,556 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_37_X7Y6__gate048 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,872 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_38_X4Y7__gate116 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,412 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_39_X1Y7__gate120 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,524 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_40_X16Y7__gate038 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,662 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_41_X11Y8__gate058 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,223 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_42_X14Y5__gate009 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,719 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_44_X2Y7__gate110 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,187 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_45_X3Y3__gate090 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,949 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_48_X14Y8__gate033 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,718 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_52_X9Y3__gate074 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,892 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_53_X6Y8__gate043 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,150 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_55_X10Y7__gate056 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,635 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_57_X8Y6__gate051 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,248 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_58_X15Y1__gate018 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,347 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_60_X11Y7__gate059 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,309 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_61_X3Y4__gate089 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,939 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_62_X7Y7__gate047 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,929 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_63_X4Y9__gate126 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,335 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_68_X9Y1__gate075 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,239 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_69_X5Y3__gate097 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,147 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_72_X11Y1__gate027 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,709 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_7_X5Y1__gate099 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,839 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_83_X13Y2__gate007 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,354 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_86_X15Y3__gate016 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,890 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_88_X11Y5__gate024 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,204 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_88_X11Y5__gate082 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,713 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_8_X5Y9__gate127 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,996 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_92_X12Y7__gate041 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,533 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_9_X6Y9__gate128 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,695 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_105_X9Y1__gate177 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 392 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_109_X10Y6__gate162 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,570 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_10_X1Y5__gate236 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,426 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_113_X2Y5__gate222 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,221 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_120_X5Y2__gate206 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,230 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_121_X11Y8__gate164 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,312 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_123_X8Y6__gate202 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 374 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_127_X2Y8__gate219 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 6,845 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_12_X12Y8__gate168 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 921 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_130_X1Y6__gate235 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,380 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_136_X9Y4__gate178 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,180 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_138_X3Y5__gate228 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,798 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_13_X5Y8__gate188 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,901 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_145_X1Y4__gate248 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,361 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_146_X16Y6__gate142 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 63 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_148_X5Y6__gate190 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,821 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_151_X14Y7__gate134 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,006 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_152_X15Y6__gate138 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,518 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_154_X7Y4__gate212 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,277 T1T2T3T1T2T3T1T2T3 Curated