scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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Search: HNSCCHealthyLN_41616773 × 594 matches 572 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
NormalSkin_41872488__MERFISH__202405111530_D077--6-12--05112024_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 4,875 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202405111530_D077--6-12--05112024_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 6,726 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202405111530_D077--6-12--05112024_VMSC02301_region_4 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 6,315 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202405111530_D077--6-12--05112024_VMSC02301_region_5 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 4,897 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202405111530_D077--6-12--05112024_VMSC02301_region_6 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 4,698 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202405141034_D149--1-6--rerun--05142024_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 4,803 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202405141034_D149--1-6--rerun--05142024_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 5,333 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202405141034_D149--1-6--rerun--05142024_VMSC02301_region_2 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 4,619 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202405141034_D149--1-6--rerun--05142024_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 13,638 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202405141034_D149--1-6--rerun--05142024_VMSC02301_region_4 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 6,047 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202405141034_D149--1-6--rerun--05142024_VMSC02301_region_5 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 2,529 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202407031037_D134-D173--OTR-NS--07032024_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 16,460 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202407031037_D134-D173--OTR-NS--07032024_VMSC02301_region_1 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 4,922 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202407031037_D134-D173--OTR-NS--07032024_VMSC02301_region_3 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 4,286 T1T2T3T1T2T3T1T2T3 Curated
NormalSkin_41872488__MERFISH__202407031037_D134-D173--OTR-NS--07032024_VMSC02301_region_5 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 10,280 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__THD0008 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 36,781 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__THD0011 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 23,676 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD038 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 345 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD049 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 6,600 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD069 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 16,343 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD090 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 5,704 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD095 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 7,401 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD113 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 7,098 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD116A PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 2,920 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD116B PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 8,126 T1T2T3T1T2T3T1T2T3 Curated
SCN_41720090__MERFISH__202408121157_humanbrainAP1615_VMSC03601_region_0 SCN_41720090 · MERFISH / MERSCOPE Brain Healthy/control MERFISH 6,953 T1T2T3T1T2T3T1T2T3 Curated
SCN_41720090__Visium_HD__slice46_HD_expand_cell_4_10genes SCN_41720090 · Visium HD Brain Healthy/control Visium HD 16,123 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__Xenium__CTRL1 SpinalCord_38513664 · Xenium Spinal cord Healthy/control Xenium 95,825 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__Xenium__CTRL2 SpinalCord_38513664 · Xenium Spinal cord Healthy/control Xenium 99,682 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV11 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,158 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV14 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 998 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV25 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 708 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV3 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,258 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV30 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 2,007 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV31 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 827 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV34 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 845 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV36 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 931 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV38 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,828 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV45 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,386 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV46 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,403 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV49 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,499 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV5 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,739 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV54 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 712 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV57 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,523 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV58 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 2,600 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV66 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,305 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV7 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 963 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV70 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,075 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV76 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 854 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV77 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 631 T1T2T3T1T2T3T1T2T3 Curated