scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 6,288 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: primary cancer × 6,288 matches 6,263 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
NSCLC_40408481__PCF_CODEX__C_162 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,113 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_163 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,777 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_164 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,525 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_165 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,972 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_166 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,607 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_167 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,720 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_168 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,929 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_169 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,348 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_17 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,892 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_170 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,031 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_171 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,345 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_172 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,085 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_173 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,553 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_174 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,312 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_175 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,163 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_176 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,508 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_177 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,691 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_178 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,316 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_179 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,777 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_18 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,828 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_180 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,211 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_181 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,877 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_182 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,267 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_183 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,394 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_184 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,410 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_185 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,522 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_186 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,195 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_187 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,724 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_188 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,011 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_189 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,386 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_19 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,268 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_190 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,747 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_191 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,300 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_192 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,383 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_193 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,479 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_194 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,760 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_195 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,111 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_196 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,494 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_197 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,626 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_198 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,526 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_199 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,606 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_2 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,282 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_20 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,777 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_200 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,733 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_201 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,406 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_202 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,530 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_203 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,082 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_204 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,063 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_205 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,162 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_206 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,050 T1T2T3T1T2T3T1T2T3 Curated