scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 6,288 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: primary cancer × 6,288 matches 6,263 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
NSCLC_40408481__PCF_CODEX__C_207 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,708 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_208 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,618 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_209 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,000 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_21 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,250 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_210 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 12,273 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_211 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,320 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_212 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,946 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_213 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,512 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_214 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,023 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_215 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,232 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_216 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,281 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_217 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,865 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_218 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,275 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_219 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,229 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_22 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,849 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_220 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,518 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_221 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,476 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_222 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,449 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_223 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,560 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_224 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,145 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_225 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,132 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_226 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,727 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_227 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,435 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_228 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,358 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_229 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,679 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_23 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 12,807 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_230 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,310 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_231 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,249 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_232 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,068 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_233 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,396 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_234 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,985 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_235 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,697 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_236 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,809 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_237 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,845 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_238 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,940 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_239 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,025 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_24 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,886 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_240 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,196 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_241 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,409 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_242 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,288 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_243 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,587 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_244 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,451 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_245 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,524 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_246 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,464 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_247 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,552 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_248 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,720 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_249 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,731 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_25 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,972 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_250 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,602 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_251 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,462 T1T2T3T1T2T3T1T2T3 Curated