scAtria single-cell spatial atlas resource

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594 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: HNSCCHealthyLN_41616773 × 594 matches 572 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV81 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,834 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV9 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 870 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV14 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 3,475 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV15 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,946 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV16 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,666 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV17 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,829 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV18 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,527 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV19 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,355 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV20 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 3,271 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV21 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 5,165 T1T2T3T1T2T3T1T2T3 Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Alzheimers_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Healthy/control Xenium 44,955 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Healthy/control Xenium 301,854 Curated
XeniumLung_10xGenomics__Xenium__Xenium_Preview_Human_Non_diseased_Lung_With_Add_on_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Healthy/control Xenium 295,883 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBone_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Musculoskeletal Healthy/control Xenium 33,801 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBoneMarrow_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Bone marrow Healthy/control Xenium 84,518 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hHeart_nondiseased_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Heart Healthy/control Xenium 26,366 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hKidney_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Kidney Healthy/control Xenium 97,560 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_nondiseased_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Healthy/control Xenium 239,271 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLymphNode_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Lymphoid tissue Healthy/control Xenium 377,985 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hPancreas_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Pancreas Healthy/control Xenium 103,901 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hSkin_nondiseased_section_1_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Skin Healthy/control Xenium 68,476 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hSkin_nondiseased_section_2_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Skin Healthy/control Xenium 90,106 Curated
11 pcw selected area DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion DevelopingLung_39477961__PCF_CODEX__11w_selectedarea Lung Healthy/control CODEX 373,069 Source
12 pcw selected area DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion DevelopingLung_39477961__PCF_CODEX__12w_selectedarea Lung Healthy/control CODEX 200,625 Source
13 pcw selected area DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion DevelopingLung_39477961__PCF_CODEX__13w_selectedarea Lung Healthy/control CODEX 360,955 Source
6 pcw selected area DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion DevelopingLung_39477961__PCF_CODEX__6w_selectedarea Lung Healthy/control CODEX 13,167 Source
8.5 pcw selected area DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion DevelopingLung_39477961__PCF_CODEX__8.5w_selectedarea Lung Healthy/control CODEX 23,296 Source
Liver_41986723__MERFISH__M5 Liver_41986723 · MERFISH / MERSCOPE Liver Healthy/control MERFISH 102,914 Source
Liver_41986723__MERFISH__M8 Liver_41986723 · MERFISH / MERSCOPE Liver Healthy/control MERFISH 207,498 Source
Oral_41663813__Xenium__Oral_41663813_H1 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 16,985 Source
Oral_41663813__Xenium__Oral_41663813_H2a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 14,819 Source
Oral_41663813__Xenium__Oral_41663813_H2b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 5,593 Source
Oral_41663813__Xenium__Oral_41663813_H3a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,247 Source
Oral_41663813__Xenium__Oral_41663813_H3b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,601 Source
Oral_41663813__Xenium__Oral_41663813_H4 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,658 Source
Oral_41663813__Xenium__Oral_41663813_H4a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 13,955 Source
Oral_41663813__Xenium__Oral_41663813_H4b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 18,033 Source
Oral_41663813__Xenium__Oral_41663813_H5 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 23,249 Source
Oral_41663813__Xenium__Oral_41663813_H6 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 18,428 Source
Oral_41663813__Xenium__Oral_41663813_H7a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,191 Source
Oral_41663813__Xenium__Oral_41663813_H7b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 9,998 Source
Oral_41663813__Xenium__Oral_41663813_H8 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 27,704 Source
Oral_41663813__Xenium__Oral_41663813_H9a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 17,161 Source
Oral_41663813__Xenium__Oral_41663813_H9b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 20,980 Source