scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 1,128 matches · sample view
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Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
Reset columns
Search: breast × 1,128 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
BRCA_35122013__IMC__MB-0643__core1__image53 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,147 T1T2T3T1T2T3T1T2T3
BRCA_35063072__MIBI_TOF__Point2312 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,141 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0528__core1__image541 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,139 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0400__core1__image229 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,138 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0410__core1__image423 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,138 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0530__core1__image348 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,134 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_110_X14Y8__gate377 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,126 T1T2T3T1T2T3T1T2T3
BRCA_35063072__MIBI_TOF__Point4116 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,125 T1T2T3T1T2T3T1T2T3
BRCA_35063072__MIBI_TOF__Point6204 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,125 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0222__core1__image202 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,124 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0495__core1__image250 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,122 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0637__core1__image56 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,120 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0308__core1__image21 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,116 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0132__core1__image533 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,115 T1T2T3T1T2T3T1T2T3
BRCA_35063072__MIBI_TOF__Point6203 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,111 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0002__core1__image345 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,111 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0537__core1__image488 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,110 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0532__core1__image125 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,109 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0473__core1__image316 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,096 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0492__core1__image276 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,096 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0899__core1__image536 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,096 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0523__core1__image144 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,094 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0134__core1__image38 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,092 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_278_X4Y2__gate355 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,089 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0005__core1__image211 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,088 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0028__core1__image413 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,088 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0516__core1__image231 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,086 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0376__core1__image317 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,083 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0050__core1__image48 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,081 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0107__core1__image350 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,080 T1T2T3T1T2T3T1T2T3
BRCA_35063072__MIBI_TOF__Point2324 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Healthy/control MIBI 1,079 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0584__core1__image22 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,078 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0010__core1__image420 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,077 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0270__core1__image220 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,074 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0552__core1__image8 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,072 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0666__core1__image355 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,072 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0650__core1__image418 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,065 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0660__core1__image263 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,063 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0124__core1__image270 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,060 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0340__core1__image87 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,060 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0519__core1__image209 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,059 T1T2T3T1T2T3T1T2T3
BRCA_35063072__MIBI_TOF__Point3119 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,058 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0018__core1__image128 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,057 T1T2T3T1T2T3T1T2T3
BRCA_35063072__MIBI_TOF__Point4133 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,056 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0469__core1__image337 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,050 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0385__core1__image293 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,043 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0483__core1__image323 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,041 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0269__core1__image415 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,037 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0225__core1__image391 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,036 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0417__core1__image214 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,031 T1T2T3T1T2T3T1T2T3