scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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6,354 Samples
SearchFiltered ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: primary cancer × 6,354 matches 6,329 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_31959985__IMC__BaselTMA_SP42_29_X7Y2__gate213 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,028 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_30_X9Y3__gate175 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,204 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_35_X16Y4__gate150 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,684 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_36_X5Y1__gate207 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,291 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_46_X10Y7__gate161 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,901 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_51_X1Y2__gate250 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,727 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_56_X2Y6__gate221 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,141 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_59_X3Y9__gate223 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,500 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_5_X8Y7__gate201 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,381 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_64_X13Y4__gate143 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,906 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_6_X11Y1__gate186 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,900 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_70_X5Y3__gate205 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,097 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_71_X8Y8__gate200 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,976 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_73_X12Y7__gate169 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,867 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_74_X15Y3__gate148 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,698 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_76_X13Y6__gate131 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,440 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_80_X3Y3__gate241 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,308 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_81_X11Y4__gate183 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,203 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_82_X2Y9__gate218 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,024 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_84_X7Y1__gate214 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,199 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_87_X12Y5__gate171 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,005 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_89_X4Y6__gate232 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,730 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_91_X11Y3__gate184 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,086 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_98_X11Y5__gate167 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,511 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_99_X5Y7__gate189 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,923 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_0_X10Y7__gate275 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,789 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_102_X1Y4__gate362 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,151 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_103_X5Y4__gate321 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,175 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_107_X4Y7__gate350 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,831 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_108_X13Y8__gate376 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 6,320 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_110_X14Y8__gate377 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,126 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_111_X8Y6__gate285 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,057 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_115_X4Y8__gate334 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,931 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_116_X3Y4__gate364 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 6,069 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_118_X13Y5__gate268 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,309 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_119_X9Y8__gate280 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,583 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_122_X12Y8__gate283 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,415 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_124_X10Y8__gate281 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 265 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_125_X5Y7__gate351 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,934 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_128_X16Y7__gate375 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,104 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_131_X13Y4__gate265 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,633 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_132_X13Y1__gate253 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,258 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_137_X10Y3__gate296 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 282 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_139_X1Y7__gate348 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,171 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_142_X5Y1__gate319 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,453 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_143_X1Y2__gate352 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 109 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_144_X15Y1__gate254 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 6,267 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_147_X6Y6__gate347 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 322 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_149_X10Y6__gate287 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 544 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_149_X10Y6__gate288 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 468 T1T2T3T1T2T3T1T2T3 Curated