scAtria single-cell spatial atlas resource

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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Sample Organ Disease state Technique Cells Spatial module Curation
BRCA_31959985__IMC__BaselTMA_SP41_114_X14Y4__gate010 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 324 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_117_X13Y3__gate006 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,572 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_117_X14Y3__gate011 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 223 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_11_X13Y7__gate031 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,565 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_126_X14Y7__gate034 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,892 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_129_X7Y8__gate046 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,751 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_133_X3Y6__gate114 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,151 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_134_X3Y8__gate112 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,211 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_135_X8Y5__gate068 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,376 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_141_X11Y2__gate026 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,662 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_141_X12Y2__gate002 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 680 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_14_X1Y8__gate115 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,401 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_153_X7Y5__gate063 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,325 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_159_X11Y4__gate083 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 309 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_159_X12Y4__gate029 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,515 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_165_X5Y6__gate121 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,708 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_166_X15Y4__gate015 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,066 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_177_X16Y4__gate019 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 587 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_177_X16Y4__gate020 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 669 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_177_X16Y5__gate021 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,723 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_186_X5Y4__gate096 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,923 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_186_X6Y4__gate100 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,965 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_187_X3Y2__gate091 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 194 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_187_X4Y2__gate095 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 62 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_18_X13Y5__gate004 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,851 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_191_X15Y7__gate036 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,544 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_196_X5Y7__gate119 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,392 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_203_X8Y8__gate049 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,771 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_206_X1Y2__gate105 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,389 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_206_X2Y2__gate088 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,853 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_20_X12Y5__gate028 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 399 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_211_X4Y6__gate117 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,284 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_212_X1Y9__gate125 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,203 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_214_X15Y6__gate037 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,123 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_216_X1Y6__gate122 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,422 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X10Y4__gate077 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,554 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X10Y4__gate104 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,468 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X9Y4__gate073 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 85 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X9Y4__gate103 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,580 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_219_X8Y7__gate050 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,755 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_220_X10Y5__gate076 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,569 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_224_X3Y7__gate113 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,593 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_227_X9Y6__gate054 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,631 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_228_X7Y3__gate065 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 263 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate045 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 842 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate061 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,602 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_234_X10Y6__gate057 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,319 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_237_X16Y6__gate039 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,765 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_238_X7Y1__gate067 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,106 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_238_X8Y1__gate071 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,047 T1T2T3T1T2T3T1T2T3 Curated