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single-cell spatial atlas resource
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Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset
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6,347 Samples
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Study ID
HNSCC_41616773
Modality
Spatial transcriptomics
Technique
Xenium
Organ
breast
Disease state
primary cancer
Disease detail
breast cancer
Filter scope
6,347 matches · sample view
Applied
Dataset
ASD_42288509 · MERFISH / MERSCOPE
10x Genomics Atera showcase
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion
BrainTumor_36725935 · IMC / Imaging Mass Cytometry
BRCA_31959985 · IMC / Imaging Mass Cytometry
BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging
BRCA_35122013 · IMC / Imaging Mass Cytometry
CastlemanDisease_40593805 · Xenium
CervicalCancer_CmTSA_41807362
cHL_41923627 · CosMx SMI / NanoString SMI
cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging
cHL_41923627 · PCF / CODEX / PhenoCycler Fusion
CML_41592325 · PCF / CODEX / PhenoCycler Fusion
Bruker CosMx 1k FFPE showcase
Bruker CosMx 64-protein FFPE showcase
Bruker CosMx 6k FFPE showcase
Bruker CosMx WTx FFPE showcase
CRC_32763154 · PCF / CODEX / PhenoCycler Fusion
CRC_40189697 · IMC / Imaging Mass Cytometry
CRC_41986711 · CosMx SMI / NanoString SMI
CRC_42167227 · CosMx SMI / NanoString SMI
CutaneousLeishmaniasis_40371647 · CosMx SMI / NanoString SMI
DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion
DKD_42056516 · CosMx SMI / NanoString SMI
DKD_42056516 · Xenium
DLBCL_41120574 · CosMx SMI / NanoString SMI
DLBCL_41874448 · CosMx SMI / NanoString SMI
DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion
GBM_40972572 · CosMx SMI Protein
HCC_39304772 · PCF / CODEX / PhenoCycler Fusion
HCC_39327501 · PCF / CODEX / PhenoCycler Fusion
HCC_39455893 · IMC / Imaging Mass Cytometry
HCC_39965889 · PCF / CODEX / PhenoCycler Fusion
LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI
HGSC_39179931 · CosMx SMI / NanoString SMI
HGSC_39179931 · MERFISH / MERSCOPE
HGSC_39179931 · Xenium
HGSOC_38570491 · CosMx SMI / NanoString SMI
HNSCC_41616773 · Other ST
HNSCC_41616773 PCF discovery cohort
HNSCC_41616773 PCF healthy lymph node cohort
HNSCC_41616773 PCF validation cohort
IBD_42049732 · CosMx SMI / NanoString SMI
LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI
IgAN_38898271 · Xenium
Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion
Intestine_39843748 · MERFISH / MERSCOPE
Intestine_39843748 · Xenium
Liver_41986723 · MERFISH / MERSCOPE
LUAD_36725934 · IMC / Imaging Mass Cytometry
Melanoma_35363543 · IMC / Imaging Mass Cytometry
Melanoma_40148341 · CosMx SMI / NanoString SMI
Melanoma_40457060 · CosMx SMI / NanoString SMI
Melanoma_41916292 · CyCIF / Cyclic IF
MERFISH 500-plex Vizgen showcase
MERFISH 815-plex Vizgen showcase
MERFISH 960-plex Vizgen showcase
MIBC_42126225 · Xenium
Neocortex_39779846 · MERFISH / MERSCOPE
Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion
NormalSkin_41872488 · MERFISH / MERSCOPE
NSCLC_38242124 · IMC / Imaging Mass Cytometry
NSCLC_40220761 · CosMx SMI / NanoString SMI
NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion
Oral_41663813 · Xenium
OSCC_41707652 · IMC / Imaging Mass Cytometry
PDAC_39227743 · CosMx SMI / NanoString SMI
PDAC_40269162 · CosMx SMI / NanoString SMI
PDAC_41916312 · Xenium
PulmonaryFibrosis_39901013 · Xenium
RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI
SCN_41720090 · MERFISH / MERSCOPE
SCN_41720090 · Visium HD
SPATCH_41107232 · CosMx SMI / NanoString SMI
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics
SPATCH_41107232 · Xenium
SpinalCord_38513664 · ISS / In Situ Sequencing
SpinalCord_38513664 · Xenium
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
UlcerativeColitis_38374043 CosMx 960-plex Run 1
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
10x Genomics Visium HD showcase
10x Genomics Visium HD p2 TissueArray showcase
10x Genomics Visium HD p2 TMA showcase
10x Genomics Visium HD p2 WholeSlide showcase
10x Genomics Xenium Prime 5K showcase
Xenium Human Brain Gene Expression Panel showcase
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Xenium Human Immuno-Oncology Profiling Panel showcase
Xenium Human Lung Gene Expression Panel showcase
Xenium Human Multi-Tissue and Cancer Panel showcase
Organ
Brain (276)
Spinal cord
Head and neck (292)
Lymphoid tissue (283)
Musculoskeletal
Skin (87)
Breast (1,001)
Lung (2,763)
Liver (506)
Adrenal gland (24)
Kidney (3)
Bladder (5)
Pancreas (111)
Small intestine
Large intestine (700)
Ovary (223)
Prostate (4)
Uterus/Cervix (7)
Bone marrow (62)
Heart
Disease state
Healthy/control
Primary cancer (6,347)
Metastatic cancer
Non-cancer disease
Disease detail
Acute lymphoid leukemia (1)
Acute myeloid leukemia (5)
Adenosquamous lung carcinoma (60)
Alzheimer's disease
Astrocytoma (Primary) (20)
Astrocytoma (Progression from grade II/III) (2)
Astrocytoma (Recurrent) (6)
Autism spectrum disorder cortical organoid model
B-cell non-Hodgkin lymphoma (35)
Brain metastasis
Brain metastasis from Bladder/urinary tract
Brain metastasis from Breast
Brain metastasis from extremity
Brain metastasis from Intestine
Brain metastasis from Lung
Brain metastasis from Ovary/Fallopian tube
Brain metastasis from Skin
Brain metastasis from Stomach/upper GI
Brain metastasis from trunk
Breast cancer (883)
Breast cancer (CCH/DCIS, ER+/PR+/HER2-1+) (1)
Breast cancer (DCIS, ER+/PR+/HER2-2+) (2)
Breast cancer (DCIS, ER-/PR-/HER2-2+) (1)
Breast cancer (DCIS, HER2-1+) (2)
Breast cancer (DCIS, HER2-2+) (1)
Breast cancer (DCIS, HER2-3+) (1)
Breast cancer (ductal carcinoma in situ) (59)
Breast cancer (ductal carcinoma in situ, HER2-1+) (1)
Breast cancer (IDC, ER+/PR+/HER2-1+) (1)
Breast cancer (IDC, ER+/PR+/HER2-2+) (1)
Breast cancer (IDC, HER2-) (1)
Breast cancer (invasive ductal carcinoma) (12)
Breast cancer (invasive ductal carcinoma, ductal carcinoma in situ) (2)
Breast cancer (invasive lobular carcinoma) (6)
Castleman disease
Cervical Cancer (1)
Cervical cancer (2)
Cervical cancer (squamous cell carcinoma) (1)
Chronic myeloid leukemia bone marrow (55)
Classical Hodgkin lymphoma (79)
Colorectal cancer (682)
Colorectal cancer (adenocarcinoma) (13)
Cutaneous leishmaniasis
Developing healthy lung
Diffuse large B-cell lymphoma (92)
Experimental autoimmune encephalomyelitis (multiple sclerosis model)
Follicular lymphoid hyperplasia
Glioblastoma (6)
Glioblastoma (Primary) (209)
Glioblastoma (Progression from grade II/III) (3)
Glioblastoma (Recurrent) (16)
Glioblastoma (Residual) (2)
Glioma, IDH status unknown (Primary) (12)
Head and neck squamous cell carcinoma (277)
Healthy/control kidney
Healthy/control lung
Healthy/normal skin
Healthy adult human intestine
Healthy colon control
Healthy human
Healthy intestine
Hepatocellular carcinoma (500)
High-grade serous carcinoma (204)
IgA nephropathy
Inflammatory bowel disease
Intrahepatic cholangiocarcinoma (6)
Kidney cancer (1)
Kidney cancer (papillary renal cell carcinoma) (1)
Kidney cancer (renal cell carcinoma) (1)
Kidney disease (AA amyloid)
Kidney disease (C3GN)
Kidney disease (CKD)
Kidney disease (DKD)
Kidney disease (DKD+FSGS)
Kidney disease (DM)
Kidney disease (DM/HTN)
Kidney disease (FSGS)
Kidney disease (HTN)
Kidney disease (IgA)
Kidney disease (MN)
Kidney disease (TMA)
Large-cell/other non-small cell lung cancer (15)
Lung adenocarcinoma (1,413)
Lung cancer (4)
Lung cancer (invasive acinar adenocarcinoma) (6)
Lung cancer (invasive adenocarcinoma) (1)
Lung squamous cell carcinoma (137)
Lymphoid tissue metastasis
Lymphoid tissue metastasis from acral
Lymphoid tissue metastasis from extremity
Lymphoid tissue metastasis from head/neck
Lymphoid tissue metastasis from Oral cavity
Lymphoid tissue metastasis from trunk
Melanocytic nevus / non-malignant skin control
Melanoma (92)
Multiple sclerosis
Muscle-invasive bladder cancer (5)
Neuroblastoma (24)
Non-small cell lung cancer (1,114)
Normal/healthy bone marrow control
Normal/healthy breast tissue control
Normal/healthy heart control
Normal/healthy hippocampus brain tissue
Normal/healthy kidney control
Normal/healthy liver control
Normal/healthy pancreas control
Normal/healthy suprachiasmatic nucleus brain tissue
Normal/healthy tonsil control
Normal brain cortex
Normal developing human neocortex
Oral health
Oral squamous cell carcinoma (92)
Organ-specific lymph-node control/no cancer
Organ-specific spinal-cord control/no cancer
Other non-small cell lung cancer (13)
Ovarian cancer (10)
Ovarian cancer (adenocarcinoma) (1)
Ovarian cancer (clear cell adenocarcinoma) (1)
Ovarian cancer (papillary serous carcinoma) (7)
Pancreatic cancer (1)
Pancreatic ductal adenocarcinoma (110)
Periodontitis
Prostate cancer (2)
Prostate cancer (adenocarcinoma) (2)
Pulmonary fibrosis / interstitial lung disease (cHP)
Pulmonary fibrosis / interstitial lung disease (CPFE)
Pulmonary fibrosis / interstitial lung disease (CTD-ILD)
Pulmonary fibrosis / interstitial lung disease (ILD)
Pulmonary fibrosis / interstitial lung disease (IPAF)
Pulmonary fibrosis / interstitial lung disease (IPF)
Pulmonary fibrosis / interstitial lung disease (NSIP)
Pulmonary fibrosis / interstitial lung disease (Sarcoidosis)
Reactive Follicular Hyperplasia
Reactive follicular hyperplasia
Reactive lymph node
Rheumatoid arthritis (active)
Rheumatoid arthritis (remission)
Skin cancer (1)
Skin metastasis
Skin metastasis from extremity
Skin metastasis from head/neck
Skin metastasis from trunk
Triple-negative breast cancer (27)
Ulcerative colitis
Ulcerative colitis (post-vedolizumab, non-responder)
Ulcerative colitis (post-vedolizumab, responder)
Ulcerative colitis (pre-vedolizumab, non-responder)
Ulcerative colitis (pre-vedolizumab, responder)
Ulcerative colitis (vedolizumab-treated)
Uterine cancer (3)
Technique
Atera (1)
CmTSA (1)
CosMx SMI / NanoString SMI (17)
CosMx SMI Protein (1)
CyCIF / Cyclic IF (1)
IMC / Imaging Mass Cytometry (9)
ISS / In Situ Sequencing
MERFISH / MERSCOPE (3)
MIBI-TOF / Multiplexed Ion Beam Imaging (2)
Other ST (1)
PCF / CODEX / PhenoCycler Fusion (15)
Stereo-seq / Stereo-seq Spatial Transcriptomics (1)
Visium HD (4)
Xenium (11)
Modality
Spatial proteomics (29)
Spatial transcriptomics (38)
Sample
Atera_10xGenomics__Atera__WTA_Preview_FFPE_Breast_Cancer
Atera_10xGenomics__Atera__WTA_Preview_FFPE_Cervical_Cancer
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Breast_Cancer
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Colon_Cancer
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Lung_Cancer
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C06
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C06
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C06
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C06
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C06
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C01
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C02
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C03
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C04
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C05
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C06
VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_11mm_Human_Colon_Cancer_Fresh_Frozen
VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Colon_Cancer
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF_Min_Depth
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Pancreatic_Cancer
Visium_HD_10xGenomics__Visium_HD__Visium_HD_FF_Human_Breast_Cancer
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fixed_Frozen
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF_Min_Depth
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Prostate_Cancer_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Breast_Cancer_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Cervical_Cancer_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lung_Cancer_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_Cancer_FF
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_FF
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Prostate_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Skin_FFPE
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Ovarian_Cancer_FFPE_XRrun
B-NHL_38379051__PCF_CODEX__191_1reg001
B-NHL_38379051__PCF_CODEX__191_1reg002
B-NHL_38379051__PCF_CODEX__191_1reg003
B-NHL_38379051__PCF_CODEX__191_1reg004
B-NHL_38379051__PCF_CODEX__191_1reg005
B-NHL_38379051__PCF_CODEX__191_1reg006
B-NHL_38379051__PCF_CODEX__191_2reg001
B-NHL_38379051__PCF_CODEX__191_2reg002
B-NHL_38379051__PCF_CODEX__191_2reg003
B-NHL_38379051__PCF_CODEX__191_2reg004
B-NHL_38379051__PCF_CODEX__191_2reg005
B-NHL_38379051__PCF_CODEX__191_2reg006
B-NHL_38379051__PCF_CODEX__191_2reg007
B-NHL_38379051__PCF_CODEX__191_2reg008
B-NHL_38379051__PCF_CODEX__191_3reg001
B-NHL_38379051__PCF_CODEX__191_3reg002
B-NHL_38379051__PCF_CODEX__191_3reg003
B-NHL_38379051__PCF_CODEX__191_3reg004
B-NHL_38379051__PCF_CODEX__191_3reg005
B-NHL_38379051__PCF_CODEX__191_3reg006
B-NHL_38379051__PCF_CODEX__191_3reg007
B-NHL_38379051__PCF_CODEX__191_3reg008
B-NHL_38379051__PCF_CODEX__191_4reg001
B-NHL_38379051__PCF_CODEX__191_4reg002
B-NHL_38379051__PCF_CODEX__191_4reg003
B-NHL_38379051__PCF_CODEX__191_4reg004
B-NHL_38379051__PCF_CODEX__191_4reg005
B-NHL_38379051__PCF_CODEX__191_4reg006
B-NHL_38379051__PCF_CODEX__191_4reg007
B-NHL_38379051__PCF_CODEX__191_5reg001
B-NHL_38379051__PCF_CODEX__191_5reg002
B-NHL_38379051__PCF_CODEX__191_5reg003
B-NHL_38379051__PCF_CODEX__191_5reg004
B-NHL_38379051__PCF_CODEX__191_5reg005
B-NHL_38379051__PCF_CODEX__191_5reg006
BoneMarrow_38714197__PCF_CODEX__SB67_NBM44_AML2_191_CODEX_Mesmer
BoneMarrow_38714197__PCF_CODEX__SB67_NBM46_AML1_382_CODEX_Mesmer
BoneMarrow_38714197__PCF_CODEX__SB67_NBM51_AML1_183_CODEX_Mesmer
BoneMarrow_38714197__PCF_CODEX__SB67_NBM52_AML3_1329_CODEX_Mesmer
BoneMarrow_38714197__PCF_CODEX__SB67_NBM54_AML3_1443_CODEX_Mesmer
BrainTumor_36725935__IMC__Glioma_001C1
BrainTumor_36725935__IMC__Glioma_001C2
BrainTumor_36725935__IMC__Glioma_002C1
BrainTumor_36725935__IMC__Glioma_002C2
BrainTumor_36725935__IMC__Glioma_003C
BrainTumor_36725935__IMC__Glioma_004C1
BrainTumor_36725935__IMC__Glioma_004C2
BrainTumor_36725935__IMC__Glioma_005C1
BrainTumor_36725935__IMC__Glioma_005C2
BrainTumor_36725935__IMC__Glioma_006C1
BrainTumor_36725935__IMC__Glioma_006C2
BrainTumor_36725935__IMC__Glioma_007C1
BrainTumor_36725935__IMC__Glioma_007C2
BrainTumor_36725935__IMC__Glioma_008C1
BrainTumor_36725935__IMC__Glioma_008C2
BrainTumor_36725935__IMC__Glioma_009C1
BrainTumor_36725935__IMC__Glioma_009C2
BrainTumor_36725935__IMC__Glioma_010C1
BrainTumor_36725935__IMC__Glioma_010C2
BrainTumor_36725935__IMC__Glioma_011C1
BrainTumor_36725935__IMC__Glioma_011C2
BrainTumor_36725935__IMC__Glioma_012C1
BrainTumor_36725935__IMC__Glioma_012C2
BrainTumor_36725935__IMC__Glioma_013C1
BrainTumor_36725935__IMC__Glioma_013C2
BrainTumor_36725935__IMC__Glioma_014C1
BrainTumor_36725935__IMC__Glioma_014C2
BrainTumor_36725935__IMC__Glioma_015C1
BrainTumor_36725935__IMC__Glioma_015C2
BrainTumor_36725935__IMC__Glioma_016C1
BrainTumor_36725935__IMC__Glioma_016C2
BrainTumor_36725935__IMC__Glioma_017C1
BrainTumor_36725935__IMC__Glioma_017C2
BrainTumor_36725935__IMC__Glioma_018C1
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BRCA_35122013__IMC__MB-0000__core1__image527
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BRCA_35122013__IMC__MB-0064__core1__image153
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BRCA_35122013__IMC__MB-0109__core1__image487
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BRCA_35122013__IMC__MB-0112__core1__image407
BRCA_35122013__IMC__MB-0114__core1__image482
BRCA_35122013__IMC__MB-0115__core1__image428
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BRCA_35122013__IMC__MB-0130__core1__image297
BRCA_35122013__IMC__MB-0131__core1__image43
BRCA_35122013__IMC__MB-0132__core1__image533
BRCA_35122013__IMC__MB-0133__core1__image466
BRCA_35122013__IMC__MB-0134__core1__image38
BRCA_35122013__IMC__MB-0134__core1__image396
BRCA_35122013__IMC__MB-0135__core1__image320
BRCA_35122013__IMC__MB-0136__core1__image201
BRCA_35122013__IMC__MB-0137__core1__image528
BRCA_35122013__IMC__MB-0138__core1__image80
BRCA_35122013__IMC__MB-0138__core2__image119
BRCA_35122013__IMC__MB-0139__core1__image30
Curation
All
Curated
DEG
All
Public ready
Available
Caveat
Missing
Held
Spatial module
All
Fresh
Missing
Sort
Curated first
Most cells
Sample
Organ
Disease state
DEG available first
Spatial ready first
Technique
Customize columns
Reset
Columns
7
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Sample
Organ
Disease detail
Disease state
Technique
Modality
Cells
DEG
Curation
Spatial module
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Search: primary cancer
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6,347 matches
6,308 curated
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Showing 6,201-6,250 of 6,347
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Sample
Organ
Disease state
Technique
Cells
Spatial module
Curation
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Juxtalesional_PDAC_Slide2_40
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
739
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Juxtalesional_PDAC_Slide2_45
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,013
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Tumor_bed_PDAC_Slide2_31
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,271
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Tumor_bed_PDAC_Slide2_32
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,333
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Tumor_bed_PDAC_Slide2_33
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,148
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Tumor_bed_PDAC_Slide2_34
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
950
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Tumor_bed_PDAC_Slide2_35
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
868
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Distant_PDAC_Slide2_19
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,504
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Distant_PDAC_Slide2_20
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,476
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Juxtalesional_PDAC_Slide2_15
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,141
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Juxtalesional_PDAC_Slide2_16
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,636
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Juxtalesional_PDAC_Slide2_17
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,813
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Juxtalesional_PDAC_Slide2_18
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,198
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Juxtalesional_PDAC_Slide2_42
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,414
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Tumor_bed_PDAC_Slide2_11
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,339
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Tumor_bed_PDAC_Slide2_12
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,730
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Tumor_bed_PDAC_Slide2_13
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,563
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Tumor_bed_PDAC_Slide2_14
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
1,351
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_10
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
918
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_41
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
673
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_6
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
380
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_7
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
578
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_8
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
812
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_9
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
942
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Tumor_bed_PDAC_Slide2_1
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
897
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Tumor_bed_PDAC_Slide2_2
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
658
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Tumor_bed_PDAC_Slide2_3
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
933
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Tumor_bed_PDAC_Slide2_4
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
700
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Tumor_bed_PDAC_Slide2_5
PDAC_40269162 · CosMx SMI / NanoString SMI
Pancreas
Primary cancer
CosMx
460
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
SPATCH_41107232__CosMx_SMI__SPATCH_CosMx_COAD
SPATCH_41107232 · CosMx SMI / NanoString SMI
Large intestine
Primary cancer
CosMx
292,371
D
I
T
Curated
SPATCH_41107232__CosMx_SMI__SPATCH_CosMx_HCC
SPATCH_41107232 · CosMx SMI / NanoString SMI
Liver
Primary cancer
CosMx
237,030
D
I
T
Curated
SPATCH_41107232__CosMx_SMI__SPATCH_CosMx_OV
SPATCH_41107232 · CosMx SMI / NanoString SMI
Ovary
Primary cancer
CosMx
289,272
D
I
T
Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_COAD
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
Large intestine
Primary cancer
CODEX
251,078
D
I
T
Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_HCC
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
Liver
Primary cancer
CODEX
160,879
D
I
T
Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_OV
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
Ovary
Primary cancer
CODEX
264,005
D
I
T
Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_COAD
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
Large intestine
Primary cancer
CODEX
165,142
D
I
T
Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_HCC
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
Liver
Primary cancer
CODEX
141,376
D
I
T
Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_OV
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
Ovary
Primary cancer
CODEX
325,192
D
I
T
Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_COAD
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
Large intestine
Primary cancer
CODEX
266,625
D
I
T
Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_HCC
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
Liver
Primary cancer
CODEX
132,648
D
I
T
Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_OV
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
Ovary
Primary cancer
CODEX
263,757
D
I
T
Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_COAD
SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics
Large intestine
Primary cancer
Stereo
361,260
D
I
T
Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_HCC
SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics
Liver
Primary cancer
Stereo
390,774
D
I
T
Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_OV
SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics
Ovary
Primary cancer
Stereo
319,366
D
I
T
Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_COAD
SPATCH_41107232 · Xenium
Large intestine
Primary cancer
Xenium
405,927
D
I
T
Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_HCC
SPATCH_41107232 · Xenium
Liver
Primary cancer
Xenium
271,687
D
I
T
Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_OV
SPATCH_41107232 · Xenium
Ovary
Primary cancer
Xenium
410,193
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210113_Breast_Cassette11_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
173,460
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210115_Breast_Cassette15_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
141,044
D
I
T
Curated
TNBC_38194915__PCF_CODEX__210118_Breast_Cassette14_reg1_v5
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
Breast
Primary cancer
CODEX
113,909
D
I
T
Curated
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