scAtria single-cell spatial atlas resource

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6,347 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: primary cancer × 6,347 matches 6,308 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
TNBC_38194915__PCF_CODEX__210118_Breast_Cassette14_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 74,059 Curated
TNBC_38194915__PCF_CODEX__210122_Breast_Cassette7_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 60,223 Curated
TNBC_38194915__PCF_CODEX__210125_Breast_Cassette5_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 16,702 Curated
TNBC_38194915__PCF_CODEX__210125_Breast_Cassette5_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 254,687 Curated
TNBC_38194915__PCF_CODEX__210127_Breast_Cassette9_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 34,159 Curated
TNBC_38194915__PCF_CODEX__210127_Breast_Cassette9_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 85,931 Curated
TNBC_38194915__PCF_CODEX__210129_Breast_Cassette4_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 169,656 Curated
TNBC_38194915__PCF_CODEX__210129_Breast_Cassette4_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 56,452 Curated
TNBC_38194915__PCF_CODEX__210201_Breast_Cassette1_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 200,217 Curated
TNBC_38194915__PCF_CODEX__210203_Breast_Cassette8_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 91,354 Curated
TNBC_38194915__PCF_CODEX__210203_Breast_Cassette8_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 113,756 Curated
TNBC_38194915__PCF_CODEX__210205_Breast_Cassette2_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 164,096 Curated
TNBC_38194915__PCF_CODEX__210208_Breast_Cassette6_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 62,214 Curated
TNBC_38194915__PCF_CODEX__210208_Breast_Cassette6_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 171,606 Curated
TNBC_38194915__PCF_CODEX__210209_Breast_Cassette3_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 34,025 Curated
TNBC_38194915__PCF_CODEX__210209_Breast_Cassette3_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 28,998 Curated
TNBC_38194915__PCF_CODEX__210210_Breast_Cassette10_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 49,826 Curated
TNBC_38194915__PCF_CODEX__210210_Breast_Cassette10_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 24,928 Curated
TNBC_38194915__PCF_CODEX__210212_Breast_Cassette17_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 54,582 Curated
TNBC_38194915__PCF_CODEX__210212_Breast_Cassette17_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 47,065 Curated
TNBC_38194915__PCF_CODEX__210215_Breast_Cassette12_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 56,084 Curated
TNBC_38194915__PCF_CODEX__210215_Breast_Cassette12_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 156,001 Curated
TNBC_38194915__PCF_CODEX__210217_Breast_Cassette13_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 100,851 Curated
TNBC_38194915__PCF_CODEX__210217_Breast_Cassette13_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 61,853 Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Glioblastoma_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Primary cancer Xenium 40,887 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 574,852 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_1 Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 892,966 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_2 Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 885,523 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_With_Addon Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 576,963 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 356,746 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC_With_Addon Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 365,604 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 254,480 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 375,529 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 209,467 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 358,519 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 380,739 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 150,145 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 373,150 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 308,531 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 201,955 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 335,709 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 192,898 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Brain_GBM_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Brain Primary cancer Xenium 816,769 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Colorectal_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Large intestine Primary cancer Xenium 388,175 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ductal_Adenocarcinoma_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Pancreas Primary cancer Xenium 235,099 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Lung Primary cancer Xenium 161,000 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ovarian_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Ovary Primary cancer Xenium 247,636 Curated
XeniumLung_10xGenomics__Xenium__Xenium_Preview_Human_Lung_Cancer_With_Add_on_2_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Primary cancer Xenium 531,165 Curated
XeniumLung_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Primary cancer Xenium 278,659 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBoneMarrow_acute_lymphoid_leukemia_section Xenium Human Multi-Tissue and Cancer Panel showcase Bone marrow Primary cancer Xenium 225,906 Curated