scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 6,745 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: breast cancer × 6,745 matches 6,675 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
NSCLC_40408481__PCF_CODEX__C_241 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,409 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_242 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,288 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_243 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,587 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_244 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,451 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_245 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,524 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_246 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,464 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_247 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,552 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_248 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,720 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_249 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,731 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_25 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,972 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_250 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,602 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_251 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,462 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_252 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,186 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_253 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,398 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_254 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,815 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_255 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,450 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_256 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,541 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_26 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,843 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_27 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,810 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_28 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,068 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_29 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,839 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_3 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,209 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_30 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,719 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_31 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,448 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_32 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,242 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_33 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,796 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_34 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,629 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_35 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,923 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_36 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,057 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_37 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,569 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_38 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,002 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_39 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,310 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_4 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,020 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_40 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,322 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_41 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,010 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_42 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,319 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_43 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,412 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_44 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,849 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_45 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,608 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_46 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,471 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_47 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,226 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_48 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,762 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_49 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,263 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_5 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,286 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_50 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,669 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_51 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,728 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_52 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,727 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_53 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,197 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_54 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,149 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_55 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,330 T1T2T3T1T2T3T1T2T3 Curated