scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 6,288 matches · sample view
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Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
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Search: primary cancer × 6,288 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
PDAC_39227743__CosMx_SMI__PDAC_39227743_U4-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 47,432
PDAC_39227743__CosMx_SMI__PDAC_39227743_U4-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 46,798
PDAC_39227743__CosMx_SMI__PDAC_39227743_T5-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,794
PDAC_39227743__CosMx_SMI__PDAC_39227743_T2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,658
GSM9625561_A1R5 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625561_A1R5 Bladder Primary cancer Xenium 42,825
GBM_40972572__CosMx_SMI_protein__UM04 GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 42,658
PDAC_39227743__CosMx_SMI__PDAC_39227743_T4-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 42,432
HGSOC_38570491__CosMx_SMI__HGSOC_38570491_SP5_Run5452_S2 HGSOC_38570491 · CosMx SMI / NanoString SMI Ovary Primary cancer CosMx 39,959
PDAC_39227743__CosMx_SMI__PDAC_39227743_U2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 34,334
PDAC_39227743__CosMx_SMI__PDAC_39227743_T3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 33,800
PDAC_39227743__CosMx_SMI__PDAC_39227743_T1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 31,084
GSM9625559_A1R2 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625559_A1R2 Bladder Primary cancer Xenium 29,816
PDAC_39227743__CosMx_SMI__PDAC_39227743_U1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 24,894
GSM9625560_A1R4 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625560_A1R4 Bladder Primary cancer Xenium 22,095
GSM9625563_A2R2 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625563_A2R2 Bladder Primary cancer Xenium 20,552
GSM9625562_A1R6 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625562_A1R6 Bladder Primary cancer Xenium 16,587
Melanoma_40457060__CosMx_SMI__Tumor_1 Melanoma_40457060 · CosMx SMI / NanoString SMI Skin Primary cancer CosMx 16,214
PDAC_39227743__CosMx_SMI__PDAC_39227743_U3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 15,019
GBM_40972572__CosMx_SMI_protein__UM07-R GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 12,591
PDAC_39227743__CosMx_SMI__PDAC_39227743_T6-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 12,473
cHL_41923627__MIBI_TOF__fov-6 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 4,210
cHL_41923627__MIBI_TOF__fov-5 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,502
cHL_41923627__MIBI_TOF__fov-1 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,200
cHL_41923627__MIBI_TOF__fov-2 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,088
cHL_41923627__MIBI_TOF__fov-4 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,065
cHL_41923627__MIBI_TOF__fov-3 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 2,311
Melanoma_40457060__CosMx_SMI__Tumor_2 Melanoma_40457060 · CosMx SMI / NanoString SMI Skin Primary cancer CosMx 2,248
BRCA_35122013__IMC__MB-0471__core1__image104 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 7
NSCLC_38242124__IMC__178_C5,12 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 5
CRC_41986711__CosMx_SMI__FOV_268 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 4
CRC_41986711__CosMx_SMI__FOV_7 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 4
LUAD_36725934__IMC__LUAD_D304 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_28 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_32 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Distant_PDAC_Slide1_25 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_12 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_13 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_14 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0