scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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SearchFiltered ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 6,745 matches · sample view
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Customized columns 7
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Search: CervicalCancer_CmTSA_41807362 × 6,745 matches 6,675 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
OSCC_41707652__IMC__11 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,131 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__12 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,313 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__13 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,207 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__14 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,688 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__15 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,248 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__16 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,156 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__17 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,336 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__18 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,278 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__19 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,212 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__2 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,949 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__20 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,935 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__21 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,965 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__22 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,684 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__23 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,878 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__24 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,440 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__25 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,523 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__26 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,061 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__27 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 10,090 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__28 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,056 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__29 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,215 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__3 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,902 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__30 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 10,574 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__31 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,437 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__32 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,787 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__33 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,622 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__34 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,561 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__35 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,268 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__36 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,683 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__37 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,825 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__38 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,949 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__39 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,616 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__4 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,557 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__40 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,419 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__41 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,672 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__42 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 4,822 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__43 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,599 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__44 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,579 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__45 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,424 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__46 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,449 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__47 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,852 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__48 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,251 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__49 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,008 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__5 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,924 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__50 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,808 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__51 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,028 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__52 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,690 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__53 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,464 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__54 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,413 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__55 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,025 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__56 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,026 T1T2T3T1T2T3T1T2T3 Curated