scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
1,128 Samples
SearchFiltered ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 1,128 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: breast × 1,128 matches 1,128 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_35122013__IMC__MB-0161__core1__image122 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,003 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0162__core1__image515 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 85 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0163__core1__image445 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,437 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0164__core1__image374 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 417 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0165__core1__image115 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 685 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0165__core2__image512 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 477 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0166__core1__image298 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 517 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0167__core1__image84 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,666 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0168__core1__image78 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 819 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0169__core1__image72 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 345 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0170__core1__image131 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,153 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0173__core1__image45 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 183 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0174__core1__image33 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 954 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0175__core1__image23 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,002 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0176__core1__image67 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,175 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0177__core1__image52 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 630 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0178__core1__image34 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,163 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0179__core1__image549 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,569 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0180__core1__image59 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,247 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0181__core1__image49 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,293 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0182__core1__image28 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,671 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0183__core1__image15 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 332 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0184__core1__image54 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,714 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0184__core2__image544 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 225 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0184__core3__image553 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,499 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0185__core1__image517 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 956 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0186__core1__image156 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 178 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0186__core1__image501 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,218 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0188__core1__image537 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,004 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0189__core1__image513 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 911 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0190__core1__image493 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 869 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0190__core2__image534 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 937 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0191__core1__image477 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,349 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0192__core1__image68 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 808 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0193__core1__image327 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 150 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0193__core1__image333 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 94 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0194__core1__image535 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,184 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0195__core1__image379 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,437 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0197__core1__image172 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 201 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0198__core1__image474 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,333 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0199__core1__image157 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,226 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0200__core1__image393 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,153 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0201__core1__image497 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 580 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0202__core1__image341 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,253 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0203__core1__image255 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 767 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0203__core1__image62 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 880 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0204__core1__image123 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 231 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0205__core1__image282 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 394 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0206__core1__image429 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,285 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0208__core1__image334 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 625 T1T2T3T1T2T3T1T2T3 Curated