scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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6,354 Samples
SearchFiltered ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: primary cancer × 6,354 matches 6,329 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_31959985__IMC__BaselTMA_SP43_150_X5Y3__gate315 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,342 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_157_X4Y5__gate369 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 688 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_15_X1Y9__gate337 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,396 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_168_X10Y5__gate305 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 6,908 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_170_X3Y3__gate360 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,024 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_172_X9Y2__gate292 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,053 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_173_X2Y8__gate332 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,802 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_17_X11Y4__gate302 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,059 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_180_X5Y2__gate311 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,619 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_193_X9Y7__gate274 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,659 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_194_X11Y7__gate276 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 933 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_195_X11Y6__gate289 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,217 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_197_X4Y9__gate339 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 825 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_199_X8Y5__gate329 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,943 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_19_X15Y2__gate258 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,520 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_1_X1Y8__gate331 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,907 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_200_X9Y6__gate286 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,332 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_201_X14Y5__gate269 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,948 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_202_X9Y5__gate304 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,976 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_205_X3Y6__gate344 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,298 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_207_X1Y6__gate342 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,131 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_209_X11Y1__gate310 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,962 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_213_X7Y7__gate272 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,638 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_21_X3Y5__gate368 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,743 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_221_X2Y7__gate349 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,280 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_222_X7Y2__gate313 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,193 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_225_X2Y9__gate338 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,904 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_226_X6Y9__gate341 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,282 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_22_X12Y6__gate290 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,123 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_230_X11Y5__gate306 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,440 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_233_X13Y7__gate372 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,139 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_235_X11Y2__gate294 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,477 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_23_X15Y7__gate374 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,607 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_241_X7Y3__gate317 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,041 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_242_X5Y6__gate346 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,063 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_243_X13Y3__gate260 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,947 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_244_X3Y1__gate356 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,939 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_245_X6Y5__gate327 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,628 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_246_X2Y6__gate343 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,738 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_248_X8Y8__gate279 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 798 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_250_X1Y3__gate358 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,457 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_252_X6Y7__gate330 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,647 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_260_X10Y4__gate300 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,829 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_266_X7Y8__gate278 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,860 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_269_X5Y9__gate340 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,942 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_26_X16Y5__gate271 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,592 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_270_X3Y8__gate335 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,080 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_270_X6Y8__gate336 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,303 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_271_X11Y8__gate282 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,256 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_272_X11Y3__gate298 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,778 T1T2T3T1T2T3T1T2T3 Curated