scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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6,745 Samples
SearchFiltered ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 6,745 matches · sample view
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Customized columns 7
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Search: CervicalCancer_CmTSA_41807362 × 6,745 matches 6,675 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
OSCC_41707652__IMC__57 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,337 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__58 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,396 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__6 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,072 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__61 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,738 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__62 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,248 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__63 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,931 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__64 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,332 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__65 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,839 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__66 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 11,061 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__67 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,812 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__68 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,611 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__69 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,242 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__7 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,213 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__70 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,848 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__71 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,959 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__72 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,630 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__73 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,209 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__74 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,671 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__75 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,970 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__76 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,915 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__77 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,646 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__78 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,091 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__79 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,938 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__8 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,309 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__80 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,179 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__81 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,484 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__82 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,934 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__83 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,771 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__84 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,950 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__85 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,422 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__86 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 11,270 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__87 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,560 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__88 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,242 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__89 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,774 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__9 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,176 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__90 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,927 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__91 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,579 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__92 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,883 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__93 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,706 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__94 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,751 T1T2T3T1T2T3T1T2T3 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 31,084 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,658 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 33,800 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T4-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 55,369 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T4-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 42,432 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T5-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,794 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T6-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 12,473 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 24,894 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 34,334 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 15,019 Curated