scAtria single-cell spatial atlas resource

Browse

? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
Card Table
6,714 Samples
SearchFiltered
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 6,714 matches · sample view
Reset
Columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
Search: breast cancer × 6,714 matches 6,675 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
OSCC_41707652__IMC__57 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,337 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__58 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,396 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__6 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,072 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__61 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,738 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__62 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,248 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__63 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,931 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__64 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,332 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__65 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,839 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__66 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 11,061 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__67 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,812 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__68 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,611 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__69 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,242 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__7 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,213 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__70 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,848 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__71 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,959 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__72 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,630 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__73 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,209 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__74 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,671 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__75 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,970 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__76 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,915 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__77 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,646 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__78 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,091 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__79 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,938 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__8 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,309 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__80 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,179 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__81 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,484 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__82 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,934 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__83 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,771 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__84 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,950 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__85 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,422 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__86 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 11,270 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__87 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,560 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__88 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,242 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__89 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,774 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__9 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,176 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__90 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,927 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__91 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,579 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__92 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,883 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__93 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,706 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__94 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,751 T1T2T3T1T2T3T1T2T3 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 31,084 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,658 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 33,800 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T4-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 55,369 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T4-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 42,432 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T5-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,794 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T6-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 12,473 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 24,894 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 34,334 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 15,019 Curated