scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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6,745 Samples
SearchFiltered ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: CervicalCancer_CmTSA_41807362 × 6,745 matches 6,675 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
PDAC_39227743__CosMx_SMI__PDAC_39227743_U4-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 47,432 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U4-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 46,798 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U5-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 74,793 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U6-a_1 PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 72,318 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U6-a_2 PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 68,410 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U7-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 70,885 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Distant_PDAC_Slide1_38 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 920 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Distant_PDAC_Slide1_39 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,086 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Distant_PDAC_Slide1_40 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 997 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_33 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 800 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_34 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 768 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_35 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 750 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_36 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 918 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_37 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 647 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_44 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 734 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_28 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_29 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 758 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_30 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 423 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_31 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 256 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_32 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_45 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 565 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Distant_PDAC_Slide1_25 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Distant_PDAC_Slide1_26 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 308 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Distant_PDAC_Slide1_27 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 576 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_20 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,145 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_21 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 757 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_22 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,120 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_23 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 986 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_24 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,195 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_42 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 955 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_15 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,266 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_16 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,341 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_17 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 873 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_18 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,289 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_19 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,626 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_43 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,258 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_10 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 699 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_11 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 958 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_12 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_13 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_14 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_6 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 666 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_7 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 701 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_8 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 520 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_9 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 433 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Tumor_bed_PDAC_Slide1_1 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,026 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Tumor_bed_PDAC_Slide1_2 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,084 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Tumor_bed_PDAC_Slide1_3 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 872 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Tumor_bed_PDAC_Slide1_4 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 905 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Tumor_bed_PDAC_Slide1_41 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 585 T1T2T3T1T2T3T1T2T3 Curated