scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 6,745 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: CervicalCancer_CmTSA_41807362 × 6,745 matches 6,675 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 160,879 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_OV SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Ovary Primary cancer CODEX 264,005 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_COAD SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 165,142 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 141,376 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_OV SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Ovary Primary cancer CODEX 325,192 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_COAD SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 266,625 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 132,648 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_OV SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Ovary Primary cancer CODEX 263,757 Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_COAD SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Large intestine Primary cancer Stereo 361,260 Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_HCC SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Liver Primary cancer Stereo 390,774 Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_OV SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Ovary Primary cancer Stereo 319,366 Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_COAD SPATCH_41107232 · Xenium Large intestine Primary cancer Xenium 405,927 Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_HCC SPATCH_41107232 · Xenium Liver Primary cancer Xenium 271,687 Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_OV SPATCH_41107232 · Xenium Ovary Primary cancer Xenium 410,193 Curated
TNBC_38194915__PCF_CODEX__210113_Breast_Cassette11_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 173,460 Curated
TNBC_38194915__PCF_CODEX__210115_Breast_Cassette15_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 141,044 Curated
TNBC_38194915__PCF_CODEX__210118_Breast_Cassette14_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 113,909 Curated
TNBC_38194915__PCF_CODEX__210118_Breast_Cassette14_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 74,059 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210122_Breast_Cassette7_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 60,223 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210125_Breast_Cassette5_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 16,702 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210125_Breast_Cassette5_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 254,687 Curated
TNBC_38194915__PCF_CODEX__210127_Breast_Cassette9_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 34,159 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210127_Breast_Cassette9_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 85,931 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210129_Breast_Cassette4_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 169,656 Curated
TNBC_38194915__PCF_CODEX__210129_Breast_Cassette4_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 56,452 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210201_Breast_Cassette1_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 200,217 Curated
TNBC_38194915__PCF_CODEX__210203_Breast_Cassette8_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 91,354 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210203_Breast_Cassette8_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 113,756 Curated
TNBC_38194915__PCF_CODEX__210205_Breast_Cassette2_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 164,096 Curated
TNBC_38194915__PCF_CODEX__210208_Breast_Cassette6_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 62,214 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210208_Breast_Cassette6_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 171,606 Curated
TNBC_38194915__PCF_CODEX__210209_Breast_Cassette3_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 34,025 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210209_Breast_Cassette3_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 28,998 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210210_Breast_Cassette10_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 49,826 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210210_Breast_Cassette10_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 24,928 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210212_Breast_Cassette17_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 54,582 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210212_Breast_Cassette17_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 47,065 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210215_Breast_Cassette12_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 56,084 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210215_Breast_Cassette12_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 156,001 Curated
TNBC_38194915__PCF_CODEX__210217_Breast_Cassette13_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 100,851 Curated
TNBC_38194915__PCF_CODEX__210217_Breast_Cassette13_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 61,853 T1T2T3T1T2T3T1T2T3 Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Glioblastoma_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Primary cancer Xenium 40,887 T1T2T3T1T2T3T1T2T3 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 574,852 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_1 Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 892,966 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_2 Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 885,523 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_With_Addon Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 576,963 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 356,746 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC_With_Addon Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 365,604 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 254,480 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 375,529 Curated