scAtria single-cell spatial atlas resource

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6,714 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: CervicalCancer_CmTSA_41807362 × 6,714 matches 6,675 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 209,467 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 358,519 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 380,739 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 150,145 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 373,150 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 308,531 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 201,955 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 335,709 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 192,898 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Brain_GBM_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Brain Primary cancer Xenium 816,769 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Colorectal_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Large intestine Primary cancer Xenium 388,175 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ductal_Adenocarcinoma_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Pancreas Primary cancer Xenium 235,099 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Lung Primary cancer Xenium 161,000 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ovarian_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Ovary Primary cancer Xenium 247,636 Curated
XeniumLung_10xGenomics__Xenium__Xenium_Preview_Human_Lung_Cancer_With_Add_on_2_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Primary cancer Xenium 531,165 Curated
XeniumLung_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Primary cancer Xenium 278,659 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBoneMarrow_acute_lymphoid_leukemia_section Xenium Human Multi-Tissue and Cancer Panel showcase Bone marrow Primary cancer Xenium 225,906 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hKidney_cancer_section Xenium Human Multi-Tissue and Cancer Panel showcase Kidney Primary cancer Xenium 56,510 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_cancer_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Primary cancer Xenium 162,628 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLung_cancer_section Xenium Human Multi-Tissue and Cancer Panel showcase Lung Primary cancer Xenium 150,365 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hPancreas_Cancer_Add_on_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Pancreas Primary cancer Xenium 190,965 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_Human_Kidney_FFPE_Protein_updated Xenium Human Multi-Tissue and Cancer Panel showcase Kidney Primary cancer Xenium 465,534 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_Human_Ovary_Cancer_FF Xenium Human Multi-Tissue and Cancer Panel showcase Ovary Primary cancer Xenium 205,082 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_human_Pancreas_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Pancreas Primary cancer Xenium 140,702 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_humanLung_Cancer_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Lung Primary cancer Xenium 162,254 Curated
GSM8876950_slide_1 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876950_slide_1 Large intestine Primary cancer CosMx 61,418 Source
GSM8876951_slide_2 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876951_slide_2 Large intestine Primary cancer CosMx 171,406 Source
GSM8876952_slide_3 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876952_slide_3 Large intestine Primary cancer CosMx 119,217 Source
GSM8876953_slide_4 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876953_slide_4 Large intestine Primary cancer CosMx 75,613 Source
GSM8876954_slide_5 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876954_slide_5 Large intestine Primary cancer CosMx 54,334 Source
GSM8876955_slide_6 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876955_slide_6 Large intestine Primary cancer CosMx 32,162 Source
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876956_slide_7 Large intestine Primary cancer CosMx 60,351 Source
GSM8876957_slide_8 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876957_slide_8 Large intestine Primary cancer CosMx 237,675 Source
GSM8876958_slide_9 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876958_slide_9 Large intestine Primary cancer CosMx 52,722 Source
GSM8876959_slide_10 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876959_slide_10 Large intestine Primary cancer CosMx 185,327 Source
GSM8876960_slide_11 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876960_slide_11 Large intestine Primary cancer CosMx 52,500 Source
GSM8876961_slide_12 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876961_slide_12 Large intestine Primary cancer CosMx 583,620 Source
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876962_slide_13 Large intestine Primary cancer CosMx 76,057 Source
GSM8876963_slide_14 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876963_slide_14 Large intestine Primary cancer CosMx 139,157 Source
DLBCL_41120574__CosMx_SMI__F1_6 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 155,694 Source
DLBCL_41120574__CosMx_SMI__F2_1 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 1,551,666 Source
DLBCL_41120574__CosMx_SMI__F3_1 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 1,169,484 Source
DLBCL_41120574__CosMx_SMI__F4_1 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 332,122 Source
DLBCL_41120574__CosMx_SMI__F5_5 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 135,185 Source
DLBCL_41120574__CosMx_SMI__F6_3 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 167,868 Source
GBM_40972572__CosMx_SMI_protein__UM02 GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 79,153 Source
GBM_40972572__CosMx_SMI_protein__UM04 GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 42,658 Source
GBM_40972572__CosMx_SMI_protein__UM06-P GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 105,034 Source
GBM_40972572__CosMx_SMI_protein__UM07-R GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 12,591 Source
HGSOC_38570491__CosMx_SMI__HGSOC_38570491_SP5_Run5452_S2 HGSOC_38570491 · CosMx SMI / NanoString SMI Ovary Primary cancer CosMx 39,959 Source