scAtria single-cell spatial atlas resource

Browse

? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
Card Table
6,693 Samples
SearchFiltered
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 6,693 matches · sample view
Reset
Columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
Search: breast cancer × 6,693 matches 6,654 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
XeniumMulti_10xGenomics__Xenium__Xenium_V1_Human_Kidney_FFPE_Protein_updated Xenium Human Multi-Tissue and Cancer Panel showcase Kidney Primary cancer Xenium 465,534 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_Human_Ovary_Cancer_FF Xenium Human Multi-Tissue and Cancer Panel showcase Ovary Primary cancer Xenium 205,082 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_human_Pancreas_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Pancreas Primary cancer Xenium 140,702 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_humanLung_Cancer_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Lung Primary cancer Xenium 162,254 Curated
GSM8876950_slide_1 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876950_slide_1 Large intestine Primary cancer CosMx 61,418 Source
GSM8876951_slide_2 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876951_slide_2 Large intestine Primary cancer CosMx 171,406 Source
GSM8876952_slide_3 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876952_slide_3 Large intestine Primary cancer CosMx 119,217 Source
GSM8876953_slide_4 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876953_slide_4 Large intestine Primary cancer CosMx 75,613 Source
GSM8876954_slide_5 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876954_slide_5 Large intestine Primary cancer CosMx 54,334 Source
GSM8876955_slide_6 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876955_slide_6 Large intestine Primary cancer CosMx 32,162 Source
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876956_slide_7 Large intestine Primary cancer CosMx 60,351 Source
GSM8876957_slide_8 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876957_slide_8 Large intestine Primary cancer CosMx 237,675 Source
GSM8876958_slide_9 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876958_slide_9 Large intestine Primary cancer CosMx 52,722 Source
GSM8876959_slide_10 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876959_slide_10 Large intestine Primary cancer CosMx 185,327 Source
GSM8876960_slide_11 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876960_slide_11 Large intestine Primary cancer CosMx 52,500 Source
GSM8876961_slide_12 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876961_slide_12 Large intestine Primary cancer CosMx 583,620 Source
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876962_slide_13 Large intestine Primary cancer CosMx 76,057 Source
GSM8876963_slide_14 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__GSM8876963_slide_14 Large intestine Primary cancer CosMx 139,157 Source
DLBCL_41120574__CosMx_SMI__F1_6 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 155,694 Source
DLBCL_41120574__CosMx_SMI__F2_1 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 1,551,666 Source
DLBCL_41120574__CosMx_SMI__F3_1 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 1,169,484 Source
DLBCL_41120574__CosMx_SMI__F4_1 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 332,122 Source
DLBCL_41120574__CosMx_SMI__F5_5 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 135,185 Source
DLBCL_41120574__CosMx_SMI__F6_3 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 167,868 Source
GBM_40972572__CosMx_SMI_protein__UM02 GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 79,153 Source
GBM_40972572__CosMx_SMI_protein__UM04 GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 42,658 Source
GBM_40972572__CosMx_SMI_protein__UM06-P GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 105,034 Source
GBM_40972572__CosMx_SMI_protein__UM07-R GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 12,591 Source
HGSOC_38570491__CosMx_SMI__HGSOC_38570491_SP5_Run5452_S2 HGSOC_38570491 · CosMx SMI / NanoString SMI Ovary Primary cancer CosMx 39,959 Source
Melanoma_40457060__CosMx_SMI__Tumor_1 Melanoma_40457060 · CosMx SMI / NanoString SMI Skin Primary cancer CosMx 16,214 Source
Melanoma_40457060__CosMx_SMI__Tumor_2 Melanoma_40457060 · CosMx SMI / NanoString SMI Skin Primary cancer CosMx 2,248 Source
GSM9625559_A1R2 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625559_A1R2 Bladder Primary cancer Xenium 29,816 Source
GSM9625560_A1R4 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625560_A1R4 Bladder Primary cancer Xenium 22,095 Source
GSM9625561_A1R5 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625561_A1R5 Bladder Primary cancer Xenium 42,825 Source
GSM9625562_A1R6 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625562_A1R6 Bladder Primary cancer Xenium 16,587 Source
GSM9625563_A2R2 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625563_A2R2 Bladder Primary cancer Xenium 20,552 Source
NSCLC_40220761__CosMx_SMI__Section_04 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 58,805 Source
NSCLC_40220761__CosMx_SMI__Section_10 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 58,228 Source
NSCLC_40220761__CosMx_SMI__Section_16 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 57,435 Source
NSCLC_40220761__CosMx_SMI__Section_22 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 59,208 Source
NSCLC_40220761__CosMx_SMI__Section_28 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 59,564 Source
NSCLC_40220761__CosMx_SMI__Section_34 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 56,959 Source
PDAC_41916312__Xenium__AF-2693_SNV_PDAC_PANCREAS__Region_3 PDAC_41916312 · Xenium Pancreas Primary cancer Xenium 77,695 Source