scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 1,008 matches · sample view
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Customized columns 7
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Search: BRCA_35063072 × 1,008 matches 1,008 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_35122013__IMC__MB-0283__core2__image540 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,952 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0285__core1__image476 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,493 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0286__core1__image404 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 308 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0287__core1__image419 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 861 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0288__core1__image347 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 211 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0289__core1__image221 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 808 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0290__core1__image481 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 622 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0291__core1__image437 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,366 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0292__core1__image10 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 922 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0294__core1__image395 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 617 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0296__core1__image411 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 800 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0300__core1__image286 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 500 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0301__core1__image287 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 425 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0301__core1__image325 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 642 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0302__core1__image142 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 100 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0304__core1__image187 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,433 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0305__core1__image11 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 546 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0305__core1__image307 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 700 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0307__core1__image106 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,280 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0308__core1__image21 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,116 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0309__core1__image551 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 963 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0311__core1__image31 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 485 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0312__core1__image178 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,876 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0314__core1__image472 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,630 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0316__core1__image494 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 953 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0318__core1__image332 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,380 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0319__core1__image339 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,150 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0320__core1__image315 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 847 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0321__core1__image378 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 374 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0321__core2__image412 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,413 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0322__core1__image65 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 856 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0322__core2__image291 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 861 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0324__core1__image455 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,267 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0325__core1__image405 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,025 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0332__core1__image457 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 358 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0333__core1__image409 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,161 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0334__core1__image448 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 151 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0336__core1__image182 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 718 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0336__core1__image183 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 166 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0339__core1__image126 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,189 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0340__core1__image479 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 975 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0340__core1__image87 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,060 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0342__core1__image370 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 367 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0343__core1__image358 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,162 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0344__core1__image363 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 639 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0345__core1__image127 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 62 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0345__core1__image502 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 751 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0347__core1__image32 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 789 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0347__core1__image42 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 185 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0348__core1__image542 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,598 T1T2T3T1T2T3T1T2T3 Curated