scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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6,354 Samples
SearchFiltered ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Search: primary cancer × 6,354 matches 6,329 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_31959985__IMC__BaselTMA_SP43_278_X3Y2__gate354 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,430 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_281_X8Y7__gate273 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,198 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_32_X4Y6__gate345 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,914 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_34_X12Y5__gate307 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,451 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_3_X13Y6__gate378 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,563 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_43_X5Y5__gate326 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,250 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_47_X16Y4__gate267 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,635 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_49_X1Y5__gate366 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,237 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_4_X15Y3__gate262 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,076 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_50_X7Y1__gate325 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,902 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_65_X14Y6__gate379 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 98 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_66_X15Y6__gate380 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,646 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_67_X14Y7__gate373 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,352 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_75_X2Y5__gate367 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,771 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_77_X3Y9__gate333 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,334 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_79_X7Y4__gate323 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,586 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_85_X9Y1__gate308 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,806 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_87_X15Y4__gate266 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,931 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_90_X7Y6__gate284 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,194 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_93_X15Y5__gate270 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,285 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_94_X12Y7__gate277 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,991 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_95_X13Y2__gate256 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,640 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_97_X16Y6__gate381 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,648 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2203 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 602 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2204 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 692 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2206 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,249 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2302 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 463 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2303 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 735 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2304 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 932 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2306 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,549 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2309 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 741 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2310 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 495 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2311 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 955 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2312 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,141 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2313 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 489 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2318 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 625 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2319 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 989 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2320 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 472 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2321 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 771 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2322 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 882 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2325 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 804 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2326 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 898 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2327 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 959 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2328 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 595 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point2331 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 491 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3102 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,202 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3104 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 411 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3105 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,148 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3107 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,179 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3108 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 900 T1T2T3T1T2T3T1T2T3 Curated