scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.Filtered
Filter scope 1,008 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: BRCA_35063072 × 1,008 matches 1,008 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_35122013__IMC__MB-0349__core1__image83 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 689 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0350__core1__image359 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 891 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0351__core1__image245 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 803 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0353__core1__image254 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 871 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0354__core1__image36 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 441 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0356__core1__image227 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 460 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0357__core1__image459 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 988 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0359__core1__image424 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 697 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0360__core1__image353 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,277 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0361__core1__image349 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 709 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0362__core1__image210 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 859 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0363__core1__image416 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,807 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0364__core1__image344 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 471 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0365__core1__image74 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 115 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0366__core1__image70 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,354 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0367__core1__image330 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 552 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0367__core1__image335 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 188 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0369__core1__image367 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,516 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0370__core1__image275 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 538 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0374__core1__image322 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 13 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0375__core1__image319 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,342 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0376__core1__image317 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,083 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0377__core1__image421 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,026 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0378__core1__image312 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 580 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0379__core1__image117 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,224 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0380__core1__image302 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,191 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0381__core1__image518 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,289 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0382__core1__image318 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 370 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0383__core1__image311 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 773 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0384__core1__image301 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,181 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0385__core1__image293 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,043 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0386__core1__image266 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 320 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0388__core1__image253 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 695 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0388__core1__image258 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 89 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0389__core1__image473 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,502 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0390__core1__image243 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 951 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0391__core1__image226 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 944 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0392__core1__image280 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 186 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0393__core1__image294 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,181 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0394__core1__image140 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 39 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0394__core2__image417 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,201 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0394__core2__image485 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,024 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0395__core1__image274 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 758 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0396__core1__image265 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,206 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0397__core1__image252 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,275 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0398__core1__image242 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 707 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0399__core1__image273 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 826 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0400__core1__image229 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,138 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0401__core1__image261 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 923 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0404__core1__image251 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 600 T1T2T3T1T2T3T1T2T3 Curated