scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
6,354 Samples
SearchFiltered ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 6,354 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: primary cancer × 6,354 matches 6,329 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_35063072__MIBI_TOF__Point3110 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,371 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3111 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 922 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3112 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 955 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3114 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 893 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3115 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,424 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3117 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 813 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3119 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,058 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3120 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 254 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3121 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,229 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3123 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 610 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3125 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,547 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3128 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,420 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point3129 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 989 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4103 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 693 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4106 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 2,079 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4115 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 936 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4116 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,125 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4117 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,019 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4120 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 577 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4127 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,004 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4128 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 830 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4130 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 828 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4132 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 629 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4133 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,056 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4136 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,016 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4410 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 654 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point4411 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 962 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point5202 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 806 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point5302 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 387 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point5303 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 919 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point5304 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 436 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point5305 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,255 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point5306 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 966 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point5308 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 841 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point5309 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 657 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point5310 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 748 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point6102 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 897 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point6103 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 873 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point6201 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 636 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point6202 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 595 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point6203 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,111 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point6204 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 1,125 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35063072__MIBI_TOF__Point6206 BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging Breast Primary cancer MIBI 691 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0000__core1__image527 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 256 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0002__core1__image345 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,111 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0005__core1__image211 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,088 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0010__core1__image420 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,077 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0013__core1__image371 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,062 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0014__core1__image326 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,569 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0018__core1__image128 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,057 T1T2T3T1T2T3T1T2T3 Curated