scAtria single-cell spatial atlas resource

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7,709 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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All records 7,709 matches 7,487 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 358,519 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 380,739 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Healthy/control Xenium 301,854 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 150,145 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 373,150 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 308,531 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 201,955 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 335,709 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 192,898 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Brain_GBM_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Brain Primary cancer Xenium 816,769 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Colorectal_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Large intestine Primary cancer Xenium 388,175 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ductal_Adenocarcinoma_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Pancreas Primary cancer Xenium 235,099 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Lung Primary cancer Xenium 161,000 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ovarian_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Ovary Primary cancer Xenium 247,636 Curated
XeniumLung_10xGenomics__Xenium__Xenium_Preview_Human_Lung_Cancer_With_Add_on_2_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Primary cancer Xenium 531,165 Curated
XeniumLung_10xGenomics__Xenium__Xenium_Preview_Human_Non_diseased_Lung_With_Add_on_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Healthy/control Xenium 295,883 Curated
XeniumLung_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Primary cancer Xenium 278,659 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBone_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Musculoskeletal Healthy/control Xenium 33,801 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBoneMarrow_acute_lymphoid_leukemia_section Xenium Human Multi-Tissue and Cancer Panel showcase Bone marrow Primary cancer Xenium 225,906 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBoneMarrow_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Bone marrow Healthy/control Xenium 84,518 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hHeart_nondiseased_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Heart Healthy/control Xenium 26,366 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hKidney_cancer_section Xenium Human Multi-Tissue and Cancer Panel showcase Kidney Primary cancer Xenium 56,510 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hKidney_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Kidney Healthy/control Xenium 97,560 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_cancer_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Primary cancer Xenium 162,628 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_nondiseased_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Healthy/control Xenium 239,271 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLung_cancer_section Xenium Human Multi-Tissue and Cancer Panel showcase Lung Primary cancer Xenium 150,365 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLymphNode_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Lymphoid tissue Healthy/control Xenium 377,985 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hPancreas_Cancer_Add_on_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Pancreas Primary cancer Xenium 190,965 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hPancreas_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Pancreas Healthy/control Xenium 103,901 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hSkin_nondiseased_section_1_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Skin Healthy/control Xenium 68,476 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hSkin_nondiseased_section_2_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Skin Healthy/control Xenium 90,106 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hTonsil_follicular_lymphoid_hyperplasia_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Lymphoid tissue Non-cancer disease Xenium 864,388 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hTonsil_reactive_follicular_hyperplasia_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Lymphoid tissue Non-cancer disease Xenium 1,349,620 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_Human_Kidney_FFPE_Protein_updated Xenium Human Multi-Tissue and Cancer Panel showcase Kidney Primary cancer Xenium 465,534 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_Human_Ovary_Cancer_FF Xenium Human Multi-Tissue and Cancer Panel showcase Ovary Primary cancer Xenium 205,082 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_human_Pancreas_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Pancreas Primary cancer Xenium 140,702 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_humanLung_Cancer_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Lung Primary cancer Xenium 162,254 Curated
GSM5910280_Panel1_CW60220F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910280_Panel1_CW60220F-1_i Brain Non-cancer disease MERFISH 38,263 Source
GSM5910281_Panel1_CW60230E-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910281_Panel1_CW60230E-1_i Brain Non-cancer disease MERFISH 33,845 Source
GSM5910282_Panel1_CW20012E-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910282_Panel1_CW20012E-1_i Brain Non-cancer disease MERFISH 23,390 Source
GSM5910283_Panel1_CW60040F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910283_Panel1_CW60040F-1_i Brain Non-cancer disease MERFISH 16,178 Source
GSM5910284_Panel1_CW20053A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910284_Panel1_CW20053A-1_i Brain Non-cancer disease MERFISH 34,305 Source
GSM5910285_Panel1_CW20069F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910285_Panel1_CW20069F-1_i Brain Non-cancer disease MERFISH 27,708 Source
GSM5910286_Panel1_CW60218E-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910286_Panel1_CW60218E-1_i Brain Non-cancer disease MERFISH 38,964 Source
GSM5910287_Panel1_CW60219E-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910287_Panel1_CW60219E-1_i Brain Non-cancer disease MERFISH 14,837 Source
GSM5910288_Panel1_CW60220F-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910288_Panel1_CW60220F-2_i Brain Non-cancer disease MERFISH 22,461 Source
GSM5910289_Panel1_CW60230E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910289_Panel1_CW60230E-2_i Brain Non-cancer disease MERFISH 6,717 Source
GSM5910290_Panel1_CW60218E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910290_Panel1_CW60218E-2_i Brain Non-cancer disease MERFISH 31,875 Source
GSM5910291_Panel1_CW60040F-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910291_Panel1_CW60040F-2_i Brain Non-cancer disease MERFISH 49,596 Source
GSM5910292_Panel2_CW60220F-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910292_Panel2_CW60220F-3_i Brain Non-cancer disease MERFISH 7,270 Source