scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
SearchFiltered ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 6,288 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: primary cancer × 6,288 matches 6,263 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_35122013__IMC__MB-0018__core1__image218 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 349 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0020__core1__image88 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 175 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0022__core1__image456 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 613 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0028__core1__image413 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,088 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0030__core1__image364 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 875 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0035__core1__image138 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 909 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0040__core1__image165 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,595 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0045__core1__image185 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,304 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0050__core1__image48 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,081 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0060__core1__image37 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,164 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0064__core1__image152 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,284 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0064__core1__image153 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 502 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0075__core1__image145 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 892 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0077__core1__image81 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 755 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0077__core2__image136 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 915 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0081__core1__image44 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,698 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0081__core2__image460 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,253 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0087__core1__image279 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 329 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0087__core1__image450 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 186 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0095__core1__image27 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,380 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0099__core1__image503 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 969 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0105__core1__image523 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,194 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0107__core1__image350 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,080 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0109__core1__image487 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,741 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0111__core1__image451 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,165 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0112__core1__image407 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 481 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0114__core1__image482 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 765 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0115__core1__image428 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,150 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0116__core1__image483 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,629 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0117__core1__image436 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,461 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0118__core1__image524 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,744 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0119__core1__image97 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,645 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0120__core1__image462 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 592 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0120__core1__image495 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 182 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0121__core1__image470 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 805 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0122__core1__image442 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 950 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0123__core1__image401 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,378 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0124__core1__image270 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,060 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0126__core1__image314 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,219 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0127__core1__image357 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 275 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0128__core1__image71 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,005 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0130__core1__image297 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 870 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0131__core1__image43 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,668 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0132__core1__image533 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,115 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0133__core1__image466 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 44 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0134__core1__image38 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,092 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0134__core1__image396 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 548 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0135__core1__image320 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,486 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0136__core1__image201 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,648 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0137__core1__image528 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,808 T1T2T3T1T2T3T1T2T3 Curated