scAtria single-cell spatial atlas resource

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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Sample Organ Disease state Technique Cells Spatial module Curation
BRCA_31959985__IMC__BaselTMA_SP42_279_X14Y6__gate135 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,544 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_27_X6Y6__gate194 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,934 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_285_X7Y7__gate197 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,542 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_28_X11Y2__gate185 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,910 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_28_X12Y2__gate173 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,363 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_29_X7Y2__gate213 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,028 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_30_X8Y3__gate216 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 400 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_30_X9Y3__gate175 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,204 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_35_X16Y4__gate150 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,684 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_36_X5Y1__gate207 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,291 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_36_X6Y1__gate211 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 576 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_46_X10Y7__gate161 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,901 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_51_X1Y2__gate250 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,727 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_56_X2Y6__gate221 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,141 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_59_X3Y9__gate223 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,500 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_5_X8Y7__gate201 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,381 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_64_X13Y4__gate143 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,906 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_64_X14Y4__gate146 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 4,833 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_6_X11Y1__gate186 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,900 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_6_X12Y1__gate174 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 67 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_70_X5Y3__gate205 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,097 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_70_X6Y3__gate209 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 187 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_71_X8Y8__gate200 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,976 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_73_X12Y7__gate169 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,867 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_74_X15Y3__gate148 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,698 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_74_X16Y3__gate151 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 256 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_76_X13Y6__gate131 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,440 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_80_X3Y3__gate241 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,308 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_80_X4Y3__gate245 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 175 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_81_X11Y4__gate183 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,203 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_81_X12Y4__gate187 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 736 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_82_X2Y9__gate218 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,024 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_84_X7Y1__gate214 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,199 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_84_X8Y1__gate217 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 205 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_87_X12Y5__gate171 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,005 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_89_X4Y6__gate232 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,730 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_91_X11Y3__gate184 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,086 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_91_X12Y3__gate172 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 574 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_96_X10Y3__gate180 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 700 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_98_X11Y5__gate167 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,511 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_99_X5Y7__gate189 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,923 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_0_X10Y7__gate275 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,789 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_0_X1Y1__gate370 BRCA_31959985 · IMC / Imaging Mass Cytometry Liver Healthy/control IMC 2,510 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_0_X2Y1__gate371 BRCA_31959985 · IMC / Imaging Mass Cytometry Liver Healthy/control IMC 4,433 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_102_X1Y4__gate362 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,151 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_102_X2Y4__gate363 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 461 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_103_X5Y4__gate321 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,175 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_103_X6Y4__gate322 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 179 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_107_X4Y7__gate350 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,831 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP43_108_X13Y8__gate376 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 6,320 T1T2T3T1T2T3T1T2T3 Curated