scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
SearchFiltered ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 6,288 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Search: primary cancer × 6,288 matches 6,263 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_35122013__IMC__MB-0138__core1__image80 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 252 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0138__core2__image119 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 509 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0139__core1__image30 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 476 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0140__core1__image186 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,740 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0141__core1__image116 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 216 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0142__core1__image77 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 744 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0143__core1__image26 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,313 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0144__core1__image461 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 309 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0144__core1__image552 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 591 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0145__core1__image435 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 982 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0150__core1__image155 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,203 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0151__core1__image520 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,150 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0152__core1__image452 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 126 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0153__core1__image389 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 963 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0154__core1__image539 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 228 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0154__core1__image543 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 338 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0158__core1__image303 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 459 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0161__core1__image122 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,003 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0162__core1__image515 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 85 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0163__core1__image445 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,437 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0164__core1__image374 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 417 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0165__core1__image115 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 685 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0165__core2__image512 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 477 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0166__core1__image298 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 517 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0167__core1__image84 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,666 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0168__core1__image78 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 819 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0169__core1__image72 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 345 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0170__core1__image131 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,153 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0173__core1__image45 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 183 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0174__core1__image33 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 954 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0175__core1__image23 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,002 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0176__core1__image67 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,175 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0177__core1__image52 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 630 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0178__core1__image34 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,163 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0179__core1__image549 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,569 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0180__core1__image59 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,247 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0181__core1__image49 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,293 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0182__core1__image28 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,671 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0183__core1__image15 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 332 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0184__core1__image54 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,714 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0184__core2__image544 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 225 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0184__core3__image553 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,499 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0185__core1__image517 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 956 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0186__core1__image156 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 178 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0186__core1__image501 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,218 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0188__core1__image537 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,004 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0189__core1__image513 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 911 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0190__core1__image493 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 869 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0190__core2__image534 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 937 T1T2T3T1T2T3T1T2T3 Curated
BRCA_35122013__IMC__MB-0191__core1__image477 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,349 T1T2T3T1T2T3T1T2T3 Curated